Strain Fitness in Variovorax sp. SCN45 around GFF2445

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2443 and GFF2444 are separated by 26 nucleotidesGFF2444 and GFF2445 are separated by 188 nucleotidesGFF2445 and GFF2446 are separated by 115 nucleotides GFF2443 - Iron-sulfur cluster regulator IscR, at 497,077 to 497,619 GFF2443 GFF2444 - Integral membrane protein, interacts with FtsH, at 497,646 to 498,341 GFF2444 GFF2445 - no description, at 498,530 to 498,898 GFF2445 GFF2446 - FIG00956403: hypothetical protein, at 499,014 to 501,233 GFF2446 Position (kb) 498 499Strain fitness (log2 ratio) -2 -1 0 1 2 3at 497.634 kb on + strandat 497.635 kb on - strandat 497.647 kb on + strandat 497.648 kb on - strandat 497.648 kb on - strandat 497.648 kb on - strandat 497.704 kb on + strandat 497.704 kb on + strandat 497.704 kb on + strandat 497.704 kb on + strandat 497.704 kb on + strandat 497.704 kb on + strandat 497.704 kb on + strandat 497.704 kb on + strandat 497.704 kb on + strandat 497.704 kb on + strandat 497.705 kb on - strandat 497.705 kb on - strandat 497.705 kb on - strandat 497.705 kb on - strandat 497.705 kb on - strandat 497.705 kb on - strandat 497.705 kb on - strandat 497.705 kb on - strandat 497.705 kb on - strandat 497.705 kb on - strandat 497.705 kb on - strandat 497.716 kb on + strand, within GFF2444at 497.716 kb on + strand, within GFF2444at 497.716 kb on + strand, within GFF2444at 497.716 kb on + strand, within GFF2444at 497.716 kb on + strand, within GFF2444at 497.716 kb on + strand, within GFF2444at 497.717 kb on - strand, within GFF2444at 497.717 kb on - strand, within GFF2444at 497.717 kb on - strand, within GFF2444at 497.717 kb on - strand, within GFF2444at 497.717 kb on - strand, within GFF2444at 497.717 kb on - strand, within GFF2444at 497.717 kb on - strand, within GFF2444at 497.717 kb on - strand, within GFF2444at 497.717 kb on - strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 498.124 kb on + strand, within GFF2444at 498.124 kb on + strand, within GFF2444at 498.124 kb on + strand, within GFF2444at 498.124 kb on + strand, within GFF2444at 498.124 kb on + strand, within GFF2444at 498.124 kb on + strand, within GFF2444at 498.124 kb on + strand, within GFF2444at 498.124 kb on + strand, within GFF2444at 498.125 kb on - strand, within GFF2444at 498.125 kb on - strand, within GFF2444at 498.125 kb on - strand, within GFF2444at 498.125 kb on - strand, within GFF2444at 498.125 kb on - strand, within GFF2444at 498.125 kb on - strand, within GFF2444at 498.125 kb on - strand, within GFF2444at 498.125 kb on - strand, within GFF2444at 498.125 kb on - strand, within GFF2444at 498.125 kb on - strand, within GFF2444at 498.125 kb on - strand, within GFF2444at 498.125 kb on - strand, within GFF2444at 498.256 kb on + strand, within GFF2444at 498.256 kb on + strand, within GFF2444at 498.256 kb on + strand, within GFF2444at 498.256 kb on + strand, within GFF2444at 498.256 kb on + strand, within GFF2444at 498.256 kb on + strand, within GFF2444at 498.256 kb on + strand, within GFF2444at 498.256 kb on + strand, within GFF2444at 498.256 kb on + strand, within GFF2444at 498.256 kb on + strand, within GFF2444at 498.256 kb on + strand, within GFF2444at 498.256 kb on + strand, within GFF2444at 498.257 kb on - strand, within GFF2444at 498.257 kb on - strand, within GFF2444at 498.257 kb on - strand, within GFF2444at 498.257 kb on - strand, within GFF2444at 498.257 kb on - strand, within GFF2444at 498.257 kb on - strand, within GFF2444at 498.257 kb on - strand, within GFF2444at 498.257 kb on - strand, within GFF2444at 498.257 kb on - strand, within GFF2444at 498.257 kb on - strand, within GFF2444at 498.257 kb on - strand, within GFF2444at 498.257 kb on - strand, within GFF2444at 498.320 kb on - strandat 498.885 kb on + strandat 498.886 kb on - strandat 498.886 kb on - strandat 498.886 kb on - strandat 498.886 kb on - strandat 498.886 kb on - strandat 498.914 kb on - strandat 498.914 kb on - strandat 498.930 kb on + strandat 498.930 kb on + strandat 498.930 kb on + strandat 498.930 kb on + strandat 498.931 kb on - strandat 498.931 kb on - strandat 498.931 kb on - strandat 498.942 kb on + strandat 498.942 kb on + strandat 499.115 kb on + strandat 499.116 kb on - strandat 499.348 kb on + strand, within GFF2446at 499.348 kb on + strand, within GFF2446at 499.348 kb on + strand, within GFF2446at 499.348 kb on + strand, within GFF2446at 499.348 kb on + strand, within GFF2446at 499.349 kb on - strand, within GFF2446at 499.349 kb on - strand, within GFF2446at 499.349 kb on - strand, within GFF2446at 499.411 kb on + strand, within GFF2446at 499.412 kb on - strand, within GFF2446at 499.412 kb on - strand, within GFF2446at 499.546 kb on + strand, within GFF2446at 499.546 kb on + strand, within GFF2446at 499.753 kb on + strand, within GFF2446at 499.753 kb on + strand, within GFF2446at 499.753 kb on + strand, within GFF2446at 499.753 kb on + strand, within GFF2446at 499.754 kb on - strand, within GFF2446at 499.754 kb on - strand, within GFF2446

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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497,634 + +0.0
497,635 - -0.8
497,647 + +0.5
497,648 - -0.7
497,648 - -0.3
497,648 - -0.4
497,704 + +0.1
497,704 + +0.3
497,704 + +0.6
497,704 + +0.1
497,704 + +0.2
497,704 + +0.2
497,704 + +0.3
497,704 + -0.4
497,704 + +0.2
497,704 + -0.2
497,705 - -0.4
497,705 - -0.8
497,705 - -1.2
497,705 - -0.5
497,705 - -0.2
497,705 - +0.6
497,705 - -0.3
497,705 - +1.0
497,705 - -0.2
497,705 - -0.7
497,705 - +0.3
497,716 + GFF2444 0.10 +0.7
497,716 + GFF2444 0.10 +0.7
497,716 + GFF2444 0.10 +0.1
497,716 + GFF2444 0.10 -0.9
497,716 + GFF2444 0.10 -0.3
497,716 + GFF2444 0.10 +1.5
497,717 - GFF2444 0.10 -0.7
497,717 - GFF2444 0.10 +0.2
497,717 - GFF2444 0.10 -2.4
497,717 - GFF2444 0.10 +3.2
497,717 - GFF2444 0.10 -0.1
497,717 - GFF2444 0.10 +0.1
497,717 - GFF2444 0.10 -0.4
497,717 - GFF2444 0.10 -0.4
497,717 - GFF2444 0.10 -0.4
497,740 + GFF2444 0.14 -0.2
497,740 + GFF2444 0.14 -0.4
497,740 + GFF2444 0.14 -0.7
497,740 + GFF2444 0.14 -0.4
497,740 + GFF2444 0.14 -1.0
497,740 + GFF2444 0.14 +0.1
497,740 + GFF2444 0.14 +0.1
497,740 + GFF2444 0.14 -0.8
497,740 + GFF2444 0.14 -0.8
497,740 + GFF2444 0.14 -1.2
497,740 + GFF2444 0.14 +0.0
497,740 + GFF2444 0.14 -0.2
497,740 + GFF2444 0.14 -0.3
497,740 + GFF2444 0.14 +0.1
497,740 + GFF2444 0.14 -0.4
497,740 + GFF2444 0.14 -0.5
497,740 + GFF2444 0.14 +1.1
497,740 + GFF2444 0.14 -0.5
497,740 + GFF2444 0.14 -0.5
497,740 + GFF2444 0.14 +0.6
497,740 + GFF2444 0.14 -0.2
497,740 + GFF2444 0.14 -0.4
497,740 + GFF2444 0.14 +1.0
497,740 + GFF2444 0.14 -1.8
497,741 - GFF2444 0.14 +0.6
497,741 - GFF2444 0.14 -0.5
497,741 - GFF2444 0.14 -0.6
497,741 - GFF2444 0.14 +0.4
497,741 - GFF2444 0.14 +0.1
497,741 - GFF2444 0.14 -1.5
497,741 - GFF2444 0.14 +0.1
497,741 - GFF2444 0.14 +0.5
497,741 - GFF2444 0.14 -1.5
497,741 - GFF2444 0.14 +0.3
497,741 - GFF2444 0.14 +0.2
497,741 - GFF2444 0.14 -0.2
497,741 - GFF2444 0.14 +0.4
497,741 - GFF2444 0.14 -0.6
497,741 - GFF2444 0.14 -0.4
497,741 - GFF2444 0.14 -0.2
497,741 - GFF2444 0.14 -0.1
497,741 - GFF2444 0.14 +1.0
497,741 - GFF2444 0.14 -1.0
497,741 - GFF2444 0.14 -1.1
497,741 - GFF2444 0.14 -0.1
497,741 - GFF2444 0.14 +0.3
498,124 + GFF2444 0.69 +0.1
498,124 + GFF2444 0.69 -0.3
498,124 + GFF2444 0.69 -0.5
498,124 + GFF2444 0.69 +0.2
498,124 + GFF2444 0.69 -0.7
498,124 + GFF2444 0.69 -0.1
498,124 + GFF2444 0.69 -0.5
498,124 + GFF2444 0.69 +1.1
498,125 - GFF2444 0.69 -0.1
498,125 - GFF2444 0.69 -0.4
498,125 - GFF2444 0.69 -0.7
498,125 - GFF2444 0.69 +0.2
498,125 - GFF2444 0.69 +0.2
498,125 - GFF2444 0.69 -0.3
498,125 - GFF2444 0.69 -1.2
498,125 - GFF2444 0.69 +1.6
498,125 - GFF2444 0.69 +0.3
498,125 - GFF2444 0.69 +2.2
498,125 - GFF2444 0.69 -0.9
498,125 - GFF2444 0.69 -0.5
498,256 + GFF2444 0.88 +0.3
498,256 + GFF2444 0.88 +1.4
498,256 + GFF2444 0.88 -0.5
498,256 + GFF2444 0.88 -0.3
498,256 + GFF2444 0.88 +1.8
498,256 + GFF2444 0.88 +0.1
498,256 + GFF2444 0.88 -1.0
498,256 + GFF2444 0.88 +0.2
498,256 + GFF2444 0.88 -0.5
498,256 + GFF2444 0.88 -0.3
498,256 + GFF2444 0.88 -0.4
498,256 + GFF2444 0.88 -0.4
498,257 - GFF2444 0.88 -0.4
498,257 - GFF2444 0.88 -0.9
498,257 - GFF2444 0.88 +0.1
498,257 - GFF2444 0.88 -0.2
498,257 - GFF2444 0.88 -0.5
498,257 - GFF2444 0.88 -0.1
498,257 - GFF2444 0.88 +0.3
498,257 - GFF2444 0.88 +0.9
498,257 - GFF2444 0.88 +0.2
498,257 - GFF2444 0.88 -1.2
498,257 - GFF2444 0.88 +0.7
498,257 - GFF2444 0.88 -0.6
498,320 - -0.5
498,885 + -1.1
498,886 - -0.2
498,886 - -0.4
498,886 - -0.3
498,886 - +0.4
498,886 - +2.0
498,914 - +0.1
498,914 - +0.2
498,930 + -0.5
498,930 + -1.5
498,930 + -0.5
498,930 + +0.4
498,931 - +0.4
498,931 - +0.6
498,931 - +0.3
498,942 + +0.6
498,942 + +0.2
499,115 + +0.4
499,116 - -0.7
499,348 + GFF2446 0.15 -1.6
499,348 + GFF2446 0.15 +0.4
499,348 + GFF2446 0.15 +1.1
499,348 + GFF2446 0.15 +0.2
499,348 + GFF2446 0.15 +0.6
499,349 - GFF2446 0.15 +0.4
499,349 - GFF2446 0.15 -0.7
499,349 - GFF2446 0.15 -0.3
499,411 + GFF2446 0.18 -0.4
499,412 - GFF2446 0.18 +0.7
499,412 - GFF2446 0.18 -0.4
499,546 + GFF2446 0.24 -1.2
499,546 + GFF2446 0.24 +0.2
499,753 + GFF2446 0.33 +0.6
499,753 + GFF2446 0.33 -1.6
499,753 + GFF2446 0.33 -0.5
499,753 + GFF2446 0.33 -0.5
499,754 - GFF2446 0.33 -0.4
499,754 - GFF2446 0.33 -0.4

Or see this region's nucleotide sequence