Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF241 and GFF242 overlap by 4 nucleotides GFF242 and GFF243 overlap by 4 nucleotides GFF243 and GFF244 are separated by 63 nucleotides
GFF241 - Lipopolysaccharide export system permease protein LptF, at 269,181 to 270,302
GFF241
GFF242 - Lipopolysaccharide export system permease protein LptG, at 270,299 to 271,411
GFF242
GFF243 - Sirohydrochlorin cobaltochelatase CbiX(small) (EC 4.99.1.3), at 271,408 to 271,794
GFF243
GFF244 - Cys regulon transcriptional activator CysB, at 271,858 to 272,799
GFF244
Position (kb) 270
271
272 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 271.515 kb on - strand, within GFF243 at 271.552 kb on + strand, within GFF243 at 271.552 kb on + strand, within GFF243 at 271.552 kb on + strand, within GFF243 at 271.552 kb on + strand, within GFF243 at 271.552 kb on + strand, within GFF243 at 271.552 kb on + strand, within GFF243 at 271.553 kb on - strand, within GFF243 at 271.553 kb on - strand, within GFF243 at 271.553 kb on - strand, within GFF243 at 271.553 kb on - strand, within GFF243 at 271.842 kb on + strand at 271.938 kb on + strand at 271.938 kb on + strand at 271.938 kb on + strand at 271.938 kb on + strand at 271.938 kb on + strand at 271.939 kb on - strand at 271.939 kb on - strand at 271.939 kb on - strand at 271.939 kb on - strand at 271.939 kb on - strand at 271.939 kb on - strand at 271.939 kb on - strand at 272.173 kb on + strand, within GFF244 at 272.173 kb on + strand, within GFF244 at 272.174 kb on - strand, within GFF244 at 272.347 kb on + strand, within GFF244 at 272.348 kb on - strand, within GFF244 at 272.348 kb on - strand, within GFF244
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 271,515 - GFF243 0.28 -1.1 271,552 + GFF243 0.37 -0.9 271,552 + GFF243 0.37 -1.4 271,552 + GFF243 0.37 -1.6 271,552 + GFF243 0.37 -0.8 271,552 + GFF243 0.37 +0.6 271,552 + GFF243 0.37 -2.3 271,553 - GFF243 0.37 -3.4 271,553 - GFF243 0.37 -1.3 271,553 - GFF243 0.37 -2.2 271,553 - GFF243 0.37 -1.8 271,842 + -2.2 271,938 + -1.9 271,938 + -2.1 271,938 + +0.9 271,938 + -1.4 271,938 + -2.9 271,939 - -0.9 271,939 - -2.6 271,939 - -0.8 271,939 - -1.8 271,939 - -2.7 271,939 - -2.4 271,939 - -1.4 272,173 + GFF244 0.33 -0.8 272,173 + GFF244 0.33 -0.4 272,174 - GFF244 0.34 -0.5 272,347 + GFF244 0.52 -1.6 272,348 - GFF244 0.52 -1.4 272,348 - GFF244 0.52 -0.8
Or see this region's nucleotide sequence