Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF240 and GFF241 are separated by 21 nucleotides GFF241 and GFF242 overlap by 4 nucleotides
GFF240 - Cytosol aminopeptidase PepA (EC 3.4.11.1), at 267,660 to 269,159
GFF240
GFF241 - Lipopolysaccharide export system permease protein LptF, at 269,181 to 270,302
GFF241
GFF242 - Lipopolysaccharide export system permease protein LptG, at 270,299 to 271,411
GFF242
Position (kb) 269
270
271 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 268.454 kb on - strand, within GFF240 at 268.774 kb on + strand, within GFF240 at 268.774 kb on + strand, within GFF240 at 268.774 kb on + strand, within GFF240 at 268.774 kb on + strand, within GFF240 at 268.774 kb on + strand, within GFF240 at 268.775 kb on - strand, within GFF240 at 268.775 kb on - strand, within GFF240 at 268.775 kb on - strand, within GFF240 at 268.775 kb on - strand, within GFF240 at 268.775 kb on - strand, within GFF240 at 268.775 kb on - strand, within GFF240 at 268.775 kb on - strand, within GFF240 at 268.775 kb on - strand, within GFF240 at 268.775 kb on - strand, within GFF240 at 268.780 kb on + strand, within GFF240 at 268.780 kb on + strand, within GFF240 at 268.780 kb on + strand, within GFF240 at 268.780 kb on + strand, within GFF240 at 268.780 kb on + strand, within GFF240 at 268.780 kb on + strand, within GFF240 at 268.780 kb on + strand, within GFF240 at 268.780 kb on + strand, within GFF240 at 268.780 kb on + strand, within GFF240 at 268.780 kb on + strand, within GFF240 at 268.780 kb on + strand, within GFF240 at 268.780 kb on + strand, within GFF240 at 268.781 kb on - strand, within GFF240 at 268.781 kb on - strand, within GFF240 at 268.781 kb on - strand, within GFF240 at 268.781 kb on - strand, within GFF240 at 268.781 kb on - strand, within GFF240 at 268.781 kb on - strand, within GFF240 at 268.781 kb on - strand, within GFF240 at 268.781 kb on - strand, within GFF240 at 268.781 kb on - strand, within GFF240 at 268.781 kb on - strand, within GFF240 at 268.781 kb on - strand, within GFF240 at 269.159 kb on + strand at 269.159 kb on + strand at 269.160 kb on - strand at 269.186 kb on - strand at 269.186 kb on - strand at 269.186 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 268,454 - GFF240 0.53 +0.6 268,774 + GFF240 0.74 -1.4 268,774 + GFF240 0.74 +0.2 268,774 + GFF240 0.74 -3.0 268,774 + GFF240 0.74 -0.9 268,774 + GFF240 0.74 -1.7 268,775 - GFF240 0.74 +0.1 268,775 - GFF240 0.74 -0.8 268,775 - GFF240 0.74 +0.1 268,775 - GFF240 0.74 -0.5 268,775 - GFF240 0.74 +0.1 268,775 - GFF240 0.74 +0.1 268,775 - GFF240 0.74 +0.2 268,775 - GFF240 0.74 +0.7 268,775 - GFF240 0.74 +0.0 268,780 + GFF240 0.75 +0.1 268,780 + GFF240 0.75 -0.7 268,780 + GFF240 0.75 +0.2 268,780 + GFF240 0.75 -0.4 268,780 + GFF240 0.75 -1.4 268,780 + GFF240 0.75 -1.0 268,780 + GFF240 0.75 -0.2 268,780 + GFF240 0.75 +0.0 268,780 + GFF240 0.75 +0.2 268,780 + GFF240 0.75 +0.5 268,780 + GFF240 0.75 -0.6 268,780 + GFF240 0.75 -0.9 268,781 - GFF240 0.75 +1.2 268,781 - GFF240 0.75 -0.3 268,781 - GFF240 0.75 -0.7 268,781 - GFF240 0.75 +0.0 268,781 - GFF240 0.75 -0.2 268,781 - GFF240 0.75 +1.7 268,781 - GFF240 0.75 -0.7 268,781 - GFF240 0.75 -1.6 268,781 - GFF240 0.75 +1.3 268,781 - GFF240 0.75 +0.5 268,781 - GFF240 0.75 -1.7 269,159 + -0.4 269,159 + -1.0 269,160 - -0.4 269,186 - -1.0 269,186 - +0.2 269,186 - +0.2
Or see this region's nucleotide sequence