Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2390 and GFF2391 are separated by 19 nucleotides GFF2391 and GFF2392 overlap by 4 nucleotides GFF2392 and GFF2393 are separated by 14 nucleotides GFF2393 and GFF2394 are separated by 34 nucleotides
GFF2390 - no description, at 441,387 to 441,695
GFF2390
GFF2391 - KEGG: periplasmic protein TonB, at 441,715 to 442,368
GFF2391
GFF2392 - Biopolymer transport protein ExbD/TolR, at 442,365 to 442,799
GFF2392
GFF2393 - Biopolymer transport protein ExbD/TolR, at 442,814 to 443,242
GFF2393
GFF2394 - MotA/TolQ/ExbB proton channel family protein, at 443,277 to 444,146
GFF2394
Position (kb) 442
443 Strain fitness (log2 ratio) -1
0
1 at 441.386 kb on + strand at 441.386 kb on + strand at 441.564 kb on + strand, within GFF2390 at 441.565 kb on - strand, within GFF2390 at 441.588 kb on + strand, within GFF2390 at 441.588 kb on + strand, within GFF2390 at 441.588 kb on + strand, within GFF2390 at 441.589 kb on - strand, within GFF2390 at 441.603 kb on + strand, within GFF2390 at 441.604 kb on - strand, within GFF2390 at 441.782 kb on + strand, within GFF2391 at 441.871 kb on + strand, within GFF2391 at 441.871 kb on + strand, within GFF2391 at 441.871 kb on + strand, within GFF2391 at 441.872 kb on - strand, within GFF2391 at 442.106 kb on + strand, within GFF2391 at 442.106 kb on + strand, within GFF2391 at 442.106 kb on + strand, within GFF2391 at 442.106 kb on + strand, within GFF2391 at 442.106 kb on + strand, within GFF2391 at 442.272 kb on + strand, within GFF2391 at 442.273 kb on - strand, within GFF2391 at 442.878 kb on + strand, within GFF2393 at 442.879 kb on - strand, within GFF2393 at 443.016 kb on + strand, within GFF2393 at 443.017 kb on - strand, within GFF2393 at 443.377 kb on + strand, within GFF2394 at 443.377 kb on + strand, within GFF2394 at 443.504 kb on - strand, within GFF2394 at 443.504 kb on - strand, within GFF2394 at 443.504 kb on - strand, within GFF2394 at 443.504 kb on - strand, within GFF2394 at 443.504 kb on - strand, within GFF2394
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 441,386 + -0.9 441,386 + -0.5 441,564 + GFF2390 0.57 -1.4 441,565 - GFF2390 0.58 +0.2 441,588 + GFF2390 0.65 -1.0 441,588 + GFF2390 0.65 -1.2 441,588 + GFF2390 0.65 +0.2 441,589 - GFF2390 0.65 +1.4 441,603 + GFF2390 0.70 +0.8 441,604 - GFF2390 0.70 -0.6 441,782 + GFF2391 0.10 +0.2 441,871 + GFF2391 0.24 -0.0 441,871 + GFF2391 0.24 -0.7 441,871 + GFF2391 0.24 +0.8 441,872 - GFF2391 0.24 -0.1 442,106 + GFF2391 0.60 +0.1 442,106 + GFF2391 0.60 -0.0 442,106 + GFF2391 0.60 -0.2 442,106 + GFF2391 0.60 -0.3 442,106 + GFF2391 0.60 -0.4 442,272 + GFF2391 0.85 -0.3 442,273 - GFF2391 0.85 -1.0 442,878 + GFF2393 0.15 -0.5 442,879 - GFF2393 0.15 -0.2 443,016 + GFF2393 0.47 -0.3 443,017 - GFF2393 0.47 -0.0 443,377 + GFF2394 0.11 +1.2 443,377 + GFF2394 0.11 -0.7 443,504 - GFF2394 0.26 +0.2 443,504 - GFF2394 0.26 +1.1 443,504 - GFF2394 0.26 -0.4 443,504 - GFF2394 0.26 +0.3 443,504 - GFF2394 0.26 -0.5
Or see this region's nucleotide sequence