Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2360 and GFF2361 are separated by 372 nucleotides GFF2361 and GFF2362 are separated by 124 nucleotides
GFF2360 - GGDEF domain protein, at 412,120 to 413,979
GFF2360
GFF2361 - hypothetical protein, at 414,352 to 415,041
GFF2361
GFF2362 - PQQ-dependent oxidoreductase, gdhB family, at 415,166 to 416,365
GFF2362
Position (kb) 414
415
416 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 413.373 kb on - strand, within GFF2360 at 413.402 kb on + strand, within GFF2360 at 413.402 kb on + strand, within GFF2360 at 413.402 kb on + strand, within GFF2360 at 413.402 kb on + strand, within GFF2360 at 413.402 kb on + strand, within GFF2360 at 413.402 kb on + strand, within GFF2360 at 413.403 kb on - strand, within GFF2360 at 413.403 kb on - strand, within GFF2360 at 413.403 kb on - strand, within GFF2360 at 413.403 kb on - strand, within GFF2360 at 413.403 kb on - strand, within GFF2360 at 413.403 kb on - strand, within GFF2360 at 413.403 kb on - strand, within GFF2360 at 413.403 kb on - strand, within GFF2360 at 413.435 kb on + strand, within GFF2360 at 413.436 kb on - strand, within GFF2360 at 413.436 kb on - strand, within GFF2360 at 413.441 kb on + strand, within GFF2360 at 413.442 kb on + strand, within GFF2360 at 413.442 kb on + strand, within GFF2360 at 413.442 kb on + strand, within GFF2360 at 413.442 kb on + strand, within GFF2360 at 413.442 kb on + strand, within GFF2360 at 413.442 kb on + strand, within GFF2360 at 413.442 kb on + strand, within GFF2360 at 413.443 kb on - strand, within GFF2360 at 413.443 kb on - strand, within GFF2360 at 413.443 kb on - strand, within GFF2360 at 413.443 kb on - strand, within GFF2360 at 413.443 kb on - strand, within GFF2360 at 413.443 kb on - strand, within GFF2360 at 413.443 kb on - strand, within GFF2360 at 413.443 kb on - strand, within GFF2360 at 413.443 kb on - strand, within GFF2360 at 413.443 kb on - strand, within GFF2360 at 413.443 kb on - strand, within GFF2360 at 413.443 kb on - strand, within GFF2360 at 413.443 kb on - strand, within GFF2360 at 413.443 kb on - strand, within GFF2360 at 413.444 kb on + strand, within GFF2360 at 413.444 kb on + strand, within GFF2360 at 413.444 kb on + strand, within GFF2360 at 413.444 kb on + strand, within GFF2360 at 413.444 kb on + strand, within GFF2360 at 413.444 kb on + strand, within GFF2360 at 413.444 kb on + strand, within GFF2360 at 413.444 kb on + strand, within GFF2360 at 413.444 kb on + strand, within GFF2360 at 413.444 kb on + strand, within GFF2360 at 413.444 kb on + strand, within GFF2360 at 413.444 kb on + strand, within GFF2360 at 413.444 kb on + strand, within GFF2360 at 413.444 kb on + strand, within GFF2360 at 413.444 kb on + strand, within GFF2360 at 413.444 kb on + strand, within GFF2360 at 413.445 kb on - strand, within GFF2360 at 413.445 kb on - strand, within GFF2360 at 413.445 kb on - strand, within GFF2360 at 413.445 kb on - strand, within GFF2360 at 413.445 kb on - strand, within GFF2360 at 413.445 kb on - strand, within GFF2360 at 413.445 kb on - strand, within GFF2360 at 413.445 kb on - strand, within GFF2360 at 413.445 kb on - strand, within GFF2360 at 413.445 kb on - strand, within GFF2360 at 413.445 kb on - strand, within GFF2360 at 413.445 kb on - strand, within GFF2360 at 413.445 kb on - strand, within GFF2360 at 413.445 kb on - strand, within GFF2360 at 413.445 kb on - strand, within GFF2360 at 413.445 kb on - strand, within GFF2360 at 413.445 kb on - strand, within GFF2360 at 413.567 kb on + strand, within GFF2360 at 413.567 kb on + strand, within GFF2360 at 413.568 kb on - strand, within GFF2360 at 413.576 kb on + strand, within GFF2360 at 413.576 kb on + strand, within GFF2360 at 413.576 kb on + strand, within GFF2360 at 413.576 kb on + strand, within GFF2360 at 413.577 kb on - strand, within GFF2360 at 413.577 kb on - strand, within GFF2360 at 413.577 kb on - strand, within GFF2360 at 413.577 kb on - strand, within GFF2360 at 413.577 kb on - strand, within GFF2360 at 413.577 kb on - strand, within GFF2360 at 413.833 kb on + strand at 413.833 kb on + strand at 413.833 kb on + strand at 413.834 kb on - strand at 413.834 kb on - strand at 414.105 kb on + strand at 414.105 kb on + strand at 414.105 kb on + strand at 414.106 kb on - strand at 414.106 kb on - strand at 414.106 kb on - strand at 414.106 kb on - strand at 414.106 kb on - strand at 414.118 kb on + strand at 414.123 kb on + strand at 414.123 kb on + strand at 414.123 kb on + strand at 414.123 kb on + strand at 414.123 kb on + strand at 414.124 kb on - strand at 414.124 kb on - strand at 414.124 kb on - strand at 414.124 kb on - strand at 414.124 kb on - strand at 414.124 kb on - strand at 414.124 kb on - strand at 414.124 kb on - strand at 414.126 kb on + strand at 414.126 kb on + strand at 414.126 kb on + strand at 414.126 kb on + strand at 414.126 kb on + strand at 414.126 kb on + strand at 414.126 kb on + strand at 414.126 kb on + strand at 414.127 kb on - strand at 414.127 kb on - strand at 414.127 kb on - strand at 414.127 kb on - strand at 414.127 kb on - strand at 414.127 kb on - strand at 414.127 kb on - strand at 414.127 kb on - strand at 414.127 kb on - strand at 414.127 kb on - strand at 414.127 kb on - strand at 414.127 kb on - strand at 414.127 kb on - strand at 414.129 kb on + strand at 414.129 kb on + strand at 414.129 kb on + strand at 414.130 kb on - strand at 414.130 kb on - strand at 414.130 kb on - strand at 414.132 kb on + strand at 414.132 kb on + strand at 414.132 kb on + strand at 414.132 kb on + strand at 414.133 kb on - strand at 414.133 kb on - strand at 414.133 kb on - strand at 414.133 kb on - strand at 414.133 kb on - strand at 414.134 kb on + strand at 414.136 kb on + strand at 414.136 kb on + strand at 414.137 kb on - strand at 414.137 kb on - strand at 414.142 kb on + strand at 414.143 kb on - strand at 414.159 kb on + strand at 414.219 kb on - strand at 414.277 kb on + strand at 414.490 kb on + strand, within GFF2361 at 414.490 kb on + strand, within GFF2361 at 414.490 kb on + strand, within GFF2361 at 414.491 kb on - strand, within GFF2361 at 414.491 kb on - strand, within GFF2361 at 414.491 kb on - strand, within GFF2361 at 414.491 kb on - strand, within GFF2361 at 414.491 kb on - strand, within GFF2361 at 414.491 kb on - strand, within GFF2361 at 414.751 kb on + strand, within GFF2361 at 414.751 kb on + strand, within GFF2361 at 415.030 kb on - strand at 415.030 kb on - strand at 415.030 kb on - strand at 415.030 kb on - strand at 415.030 kb on - strand at 415.030 kb on - strand at 415.030 kb on - strand at 415.030 kb on - strand at 415.030 kb on - strand at 415.086 kb on + strand at 415.086 kb on + strand at 415.086 kb on + strand at 415.087 kb on - strand at 415.511 kb on + strand, within GFF2362 at 415.511 kb on + strand, within GFF2362 at 415.511 kb on + strand, within GFF2362 at 415.511 kb on + strand, within GFF2362 at 415.511 kb on + strand, within GFF2362 at 415.511 kb on + strand, within GFF2362 at 415.511 kb on + strand, within GFF2362 at 415.511 kb on + strand, within GFF2362 at 415.511 kb on + strand, within GFF2362 at 415.511 kb on + strand, within GFF2362 at 415.512 kb on - strand, within GFF2362 at 415.512 kb on - strand, within GFF2362 at 415.512 kb on - strand, within GFF2362 at 415.512 kb on - strand, within GFF2362 at 415.512 kb on - strand, within GFF2362 at 415.512 kb on - strand, within GFF2362 at 415.512 kb on - strand, within GFF2362 at 415.512 kb on - strand, within GFF2362 at 415.512 kb on - strand, within GFF2362 at 415.512 kb on - strand, within GFF2362 at 415.520 kb on + strand, within GFF2362 at 415.520 kb on + strand, within GFF2362 at 415.520 kb on + strand, within GFF2362 at 415.520 kb on + strand, within GFF2362 at 415.520 kb on + strand, within GFF2362 at 415.520 kb on + strand, within GFF2362 at 415.521 kb on - strand, within GFF2362 at 415.521 kb on - strand, within GFF2362 at 415.700 kb on + strand, within GFF2362 at 415.700 kb on + strand, within GFF2362 at 415.700 kb on + strand, within GFF2362 at 415.700 kb on + strand, within GFF2362 at 415.701 kb on - strand, within GFF2362 at 415.701 kb on - strand, within GFF2362 at 415.701 kb on - strand, within GFF2362 at 415.701 kb on - strand, within GFF2362 at 415.701 kb on - strand, within GFF2362 at 415.701 kb on - strand, within GFF2362 at 415.760 kb on + strand, within GFF2362 at 415.760 kb on + strand, within GFF2362 at 415.761 kb on - strand, within GFF2362 at 415.761 kb on - strand, within GFF2362 at 415.763 kb on + strand, within GFF2362 at 415.763 kb on + strand, within GFF2362 at 415.763 kb on + strand, within GFF2362 at 415.763 kb on + strand, within GFF2362 at 415.764 kb on - strand, within GFF2362 at 415.764 kb on - strand, within GFF2362 at 415.764 kb on - strand, within GFF2362 at 415.851 kb on + strand, within GFF2362 at 415.851 kb on + strand, within GFF2362 at 415.851 kb on + strand, within GFF2362 at 415.851 kb on + strand, within GFF2362 at 415.852 kb on - strand, within GFF2362 at 415.852 kb on - strand, within GFF2362 at 415.852 kb on - strand, within GFF2362 at 415.852 kb on - strand, within GFF2362 at 415.976 kb on + strand, within GFF2362 at 415.976 kb on + strand, within GFF2362 at 415.976 kb on + strand, within GFF2362 at 415.977 kb on - strand, within GFF2362 at 415.977 kb on - strand, within GFF2362 at 416.009 kb on + strand, within GFF2362 at 416.009 kb on + strand, within GFF2362
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 413,373 - GFF2360 0.67 -1.8 413,402 + GFF2360 0.69 -0.0 413,402 + GFF2360 0.69 -0.8 413,402 + GFF2360 0.69 -0.7 413,402 + GFF2360 0.69 -1.3 413,402 + GFF2360 0.69 +0.2 413,402 + GFF2360 0.69 +0.2 413,403 - GFF2360 0.69 +4.0 413,403 - GFF2360 0.69 -0.3 413,403 - GFF2360 0.69 -2.0 413,403 - GFF2360 0.69 -0.7 413,403 - GFF2360 0.69 -1.0 413,403 - GFF2360 0.69 -1.1 413,403 - GFF2360 0.69 -1.1 413,403 - GFF2360 0.69 +1.3 413,435 + GFF2360 0.71 -3.5 413,436 - GFF2360 0.71 -0.1 413,436 - GFF2360 0.71 -0.8 413,441 + GFF2360 0.71 -0.4 413,442 + GFF2360 0.71 -0.5 413,442 + GFF2360 0.71 +0.4 413,442 + GFF2360 0.71 +1.7 413,442 + GFF2360 0.71 -0.4 413,442 + GFF2360 0.71 -0.7 413,442 + GFF2360 0.71 -0.5 413,442 + GFF2360 0.71 +0.1 413,443 - GFF2360 0.71 -1.5 413,443 - GFF2360 0.71 -1.0 413,443 - GFF2360 0.71 +1.7 413,443 - GFF2360 0.71 -1.3 413,443 - GFF2360 0.71 -0.1 413,443 - GFF2360 0.71 -0.3 413,443 - GFF2360 0.71 -0.7 413,443 - GFF2360 0.71 -0.5 413,443 - GFF2360 0.71 +0.3 413,443 - GFF2360 0.71 -0.3 413,443 - GFF2360 0.71 -0.3 413,443 - GFF2360 0.71 +0.2 413,443 - GFF2360 0.71 +0.6 413,443 - GFF2360 0.71 +0.1 413,444 + GFF2360 0.71 -0.4 413,444 + GFF2360 0.71 -0.2 413,444 + GFF2360 0.71 +0.0 413,444 + GFF2360 0.71 -0.5 413,444 + GFF2360 0.71 -0.3 413,444 + GFF2360 0.71 -1.7 413,444 + GFF2360 0.71 -0.2 413,444 + GFF2360 0.71 -0.2 413,444 + GFF2360 0.71 -0.9 413,444 + GFF2360 0.71 -0.2 413,444 + GFF2360 0.71 -0.3 413,444 + GFF2360 0.71 +0.6 413,444 + GFF2360 0.71 -0.0 413,444 + GFF2360 0.71 -0.3 413,444 + GFF2360 0.71 +0.3 413,444 + GFF2360 0.71 +0.3 413,445 - GFF2360 0.71 +0.1 413,445 - GFF2360 0.71 +0.0 413,445 - GFF2360 0.71 -0.8 413,445 - GFF2360 0.71 -0.7 413,445 - GFF2360 0.71 -0.3 413,445 - GFF2360 0.71 +0.3 413,445 - GFF2360 0.71 +0.3 413,445 - GFF2360 0.71 -0.2 413,445 - GFF2360 0.71 +0.6 413,445 - GFF2360 0.71 -0.1 413,445 - GFF2360 0.71 +0.1 413,445 - GFF2360 0.71 +0.1 413,445 - GFF2360 0.71 +0.3 413,445 - GFF2360 0.71 +0.0 413,445 - GFF2360 0.71 -0.7 413,445 - GFF2360 0.71 -0.8 413,445 - GFF2360 0.71 -0.7 413,567 + GFF2360 0.78 -0.3 413,567 + GFF2360 0.78 -0.8 413,568 - GFF2360 0.78 -0.2 413,576 + GFF2360 0.78 +0.1 413,576 + GFF2360 0.78 -0.9 413,576 + GFF2360 0.78 +0.3 413,576 + GFF2360 0.78 -1.0 413,577 - GFF2360 0.78 -0.1 413,577 - GFF2360 0.78 +1.7 413,577 - GFF2360 0.78 -0.8 413,577 - GFF2360 0.78 +1.2 413,577 - GFF2360 0.78 -0.2 413,577 - GFF2360 0.78 -0.1 413,833 + +1.0 413,833 + -0.1 413,833 + +1.3 413,834 - -0.5 413,834 - -0.7 414,105 + -1.0 414,105 + -0.9 414,105 + -0.3 414,106 - +0.4 414,106 - +2.4 414,106 - +0.3 414,106 - +0.4 414,106 - -0.9 414,118 + -0.5 414,123 + +0.3 414,123 + -0.1 414,123 + -0.1 414,123 + -0.5 414,123 + +2.7 414,124 - -1.2 414,124 - -1.9 414,124 - +0.4 414,124 - -0.1 414,124 - -0.1 414,124 - +1.2 414,124 - +0.0 414,124 - +0.1 414,126 + -2.2 414,126 + +0.1 414,126 + +0.7 414,126 + +0.0 414,126 + +0.3 414,126 + -0.6 414,126 + -1.8 414,126 + +0.1 414,127 - -0.8 414,127 - -0.1 414,127 - -0.6 414,127 - -1.4 414,127 - +0.7 414,127 - -0.6 414,127 - -0.8 414,127 - -0.3 414,127 - -1.7 414,127 - -1.0 414,127 - -0.2 414,127 - +0.2 414,127 - +0.2 414,129 + -0.3 414,129 + -0.3 414,129 + +1.7 414,130 - +0.1 414,130 - -0.4 414,130 - -1.0 414,132 + -0.6 414,132 + -0.9 414,132 + -0.1 414,132 + -0.1 414,133 - -0.2 414,133 - -0.3 414,133 - -0.8 414,133 - +0.1 414,133 - +1.1 414,134 + +0.3 414,136 + +0.3 414,136 + +0.3 414,137 - +1.3 414,137 - -0.3 414,142 + -3.1 414,143 - -0.3 414,159 + -1.5 414,219 - -0.2 414,277 + -0.6 414,490 + GFF2361 0.20 -0.0 414,490 + GFF2361 0.20 -0.9 414,490 + GFF2361 0.20 +0.4 414,491 - GFF2361 0.20 +0.2 414,491 - GFF2361 0.20 +0.3 414,491 - GFF2361 0.20 -1.1 414,491 - GFF2361 0.20 -0.1 414,491 - GFF2361 0.20 -0.4 414,491 - GFF2361 0.20 -1.1 414,751 + GFF2361 0.58 +0.1 414,751 + GFF2361 0.58 -0.6 415,030 - +0.3 415,030 - -0.3 415,030 - +0.1 415,030 - +1.7 415,030 - +0.1 415,030 - +0.1 415,030 - -2.7 415,030 - +1.1 415,030 - +0.3 415,086 + +0.2 415,086 + -2.7 415,086 + +0.2 415,087 - -0.0 415,511 + GFF2362 0.29 -3.0 415,511 + GFF2362 0.29 +0.5 415,511 + GFF2362 0.29 -0.2 415,511 + GFF2362 0.29 -0.9 415,511 + GFF2362 0.29 +0.7 415,511 + GFF2362 0.29 -0.2 415,511 + GFF2362 0.29 +0.4 415,511 + GFF2362 0.29 -0.1 415,511 + GFF2362 0.29 +0.1 415,511 + GFF2362 0.29 +0.9 415,512 - GFF2362 0.29 -0.3 415,512 - GFF2362 0.29 +0.7 415,512 - GFF2362 0.29 -0.1 415,512 - GFF2362 0.29 +0.7 415,512 - GFF2362 0.29 -0.0 415,512 - GFF2362 0.29 -0.9 415,512 - GFF2362 0.29 -0.5 415,512 - GFF2362 0.29 -0.5 415,512 - GFF2362 0.29 +0.5 415,512 - GFF2362 0.29 -0.3 415,520 + GFF2362 0.29 +1.5 415,520 + GFF2362 0.29 +1.0 415,520 + GFF2362 0.29 +0.3 415,520 + GFF2362 0.29 -1.1 415,520 + GFF2362 0.29 -0.3 415,520 + GFF2362 0.29 +0.2 415,521 - GFF2362 0.30 -1.0 415,521 - GFF2362 0.30 +0.9 415,700 + GFF2362 0.45 +1.0 415,700 + GFF2362 0.45 -0.1 415,700 + GFF2362 0.45 -0.4 415,700 + GFF2362 0.45 +0.0 415,701 - GFF2362 0.45 -0.7 415,701 - GFF2362 0.45 +1.7 415,701 - GFF2362 0.45 -0.3 415,701 - GFF2362 0.45 -0.9 415,701 - GFF2362 0.45 -0.6 415,701 - GFF2362 0.45 -1.8 415,760 + GFF2362 0.49 -0.3 415,760 + GFF2362 0.49 +0.9 415,761 - GFF2362 0.50 -0.3 415,761 - GFF2362 0.50 +0.2 415,763 + GFF2362 0.50 +0.1 415,763 + GFF2362 0.50 -0.6 415,763 + GFF2362 0.50 -0.7 415,763 + GFF2362 0.50 -0.5 415,764 - GFF2362 0.50 +1.7 415,764 - GFF2362 0.50 -0.2 415,764 - GFF2362 0.50 -0.8 415,851 + GFF2362 0.57 -0.0 415,851 + GFF2362 0.57 -0.8 415,851 + GFF2362 0.57 +0.6 415,851 + GFF2362 0.57 -0.2 415,852 - GFF2362 0.57 +0.9 415,852 - GFF2362 0.57 -1.2 415,852 - GFF2362 0.57 +0.6 415,852 - GFF2362 0.57 -2.9 415,976 + GFF2362 0.68 -0.5 415,976 + GFF2362 0.68 -0.3 415,976 + GFF2362 0.68 +0.1 415,977 - GFF2362 0.68 +1.1 415,977 - GFF2362 0.68 -1.1 416,009 + GFF2362 0.70 +0.1 416,009 + GFF2362 0.70 -0.5
Or see this region's nucleotide sequence