Strain Fitness in Variovorax sp. SCN45 around GFF230

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF229 and GFF230 are separated by 37 nucleotidesGFF230 and GFF231 are separated by 62 nucleotidesGFF231 and GFF232 are separated by 45 nucleotides GFF229 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 256,748 to 258,562 GFF229 GFF230 - Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9), at 258,600 to 259,382 GFF230 GFF231 - DNA ligase (ATP) (EC 6.5.1.1), at 259,445 to 260,287 GFF231 GFF232 - Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18), at 260,333 to 262,639 GFF232 Position (kb) 258 259 260Strain fitness (log2 ratio) -2 -1 0 1at 257.727 kb on + strand, within GFF229at 257.727 kb on + strand, within GFF229at 257.728 kb on - strand, within GFF229at 257.728 kb on - strand, within GFF229at 257.728 kb on - strand, within GFF229at 257.790 kb on + strand, within GFF229at 257.790 kb on + strand, within GFF229at 257.790 kb on + strand, within GFF229at 257.791 kb on - strand, within GFF229at 257.791 kb on - strand, within GFF229at 257.791 kb on - strand, within GFF229at 257.791 kb on - strand, within GFF229at 257.856 kb on + strand, within GFF229at 257.874 kb on + strand, within GFF229at 257.874 kb on + strand, within GFF229at 257.874 kb on + strand, within GFF229at 257.874 kb on + strand, within GFF229at 257.874 kb on + strand, within GFF229at 257.875 kb on - strand, within GFF229at 257.875 kb on - strand, within GFF229at 257.875 kb on - strand, within GFF229at 257.875 kb on - strand, within GFF229at 257.875 kb on - strand, within GFF229at 257.875 kb on - strand, within GFF229at 257.875 kb on - strand, within GFF229at 257.875 kb on - strand, within GFF229at 257.875 kb on - strand, within GFF229at 257.913 kb on + strand, within GFF229at 257.913 kb on + strand, within GFF229at 257.913 kb on + strand, within GFF229at 257.913 kb on + strand, within GFF229at 257.913 kb on + strand, within GFF229at 257.913 kb on + strand, within GFF229at 257.913 kb on + strand, within GFF229at 257.914 kb on - strand, within GFF229at 257.914 kb on - strand, within GFF229at 257.914 kb on - strand, within GFF229at 257.914 kb on - strand, within GFF229at 258.114 kb on + strand, within GFF229at 258.114 kb on + strand, within GFF229at 258.115 kb on - strand, within GFF229at 258.115 kb on - strand, within GFF229at 258.115 kb on - strand, within GFF229at 258.129 kb on + strand, within GFF229at 258.129 kb on + strand, within GFF229at 258.129 kb on + strand, within GFF229at 258.129 kb on + strand, within GFF229at 258.129 kb on + strand, within GFF229at 258.130 kb on - strand, within GFF229at 258.150 kb on + strand, within GFF229at 258.150 kb on + strand, within GFF229at 258.151 kb on - strand, within GFF229at 258.151 kb on - strand, within GFF229at 258.151 kb on - strand, within GFF229at 258.151 kb on - strand, within GFF229at 258.151 kb on - strand, within GFF229at 258.151 kb on - strand, within GFF229at 258.372 kb on + strand, within GFF229at 258.372 kb on + strand, within GFF229at 258.372 kb on + strand, within GFF229at 258.372 kb on + strand, within GFF229at 258.372 kb on + strand, within GFF229at 258.372 kb on + strand, within GFF229at 258.372 kb on + strand, within GFF229at 258.372 kb on + strand, within GFF229at 258.373 kb on - strand, within GFF229at 258.373 kb on - strand, within GFF229at 258.373 kb on - strand, within GFF229at 258.373 kb on - strand, within GFF229at 258.373 kb on - strand, within GFF229at 258.373 kb on - strand, within GFF229at 258.447 kb on + strandat 258.447 kb on + strandat 258.447 kb on + strandat 258.474 kb on + strandat 258.474 kb on + strandat 258.475 kb on - strandat 258.498 kb on + strandat 258.498 kb on + strandat 258.498 kb on + strandat 258.498 kb on + strandat 258.498 kb on + strandat 258.499 kb on - strandat 258.499 kb on - strandat 258.499 kb on - strandat 258.499 kb on - strandat 258.501 kb on - strandat 258.641 kb on - strandat 258.641 kb on - strandat 258.664 kb on - strandat 259.036 kb on - strand, within GFF230at 259.335 kb on + strandat 259.381 kb on - strandat 259.427 kb on + strandat 259.431 kb on + strandat 259.431 kb on + strandat 259.431 kb on + strandat 259.431 kb on + strandat 259.431 kb on + strandat 259.431 kb on + strandat 259.431 kb on + strandat 259.432 kb on - strandat 259.432 kb on - strandat 259.432 kb on - strandat 259.432 kb on - strandat 259.438 kb on + strandat 259.438 kb on + strandat 259.438 kb on + strandat 259.438 kb on + strandat 259.439 kb on - strandat 259.439 kb on - strandat 259.439 kb on - strandat 259.439 kb on - strandat 259.547 kb on + strand, within GFF231at 259.548 kb on - strand, within GFF231at 259.548 kb on - strand, within GFF231at 259.592 kb on + strand, within GFF231at 259.593 kb on - strand, within GFF231at 259.593 kb on - strand, within GFF231at 259.611 kb on - strand, within GFF231at 259.611 kb on - strand, within GFF231at 259.611 kb on - strand, within GFF231at 259.611 kb on - strand, within GFF231at 260.216 kb on + strandat 260.216 kb on + strandat 260.216 kb on + strandat 260.217 kb on - strandat 260.217 kb on - strandat 260.334 kb on + strandat 260.334 kb on + strandat 260.334 kb on + strandat 260.334 kb on + strandat 260.334 kb on + strandat 260.334 kb on + strandat 260.334 kb on + strandat 260.335 kb on - strandat 260.335 kb on - strandat 260.335 kb on - strandat 260.364 kb on + strandat 260.364 kb on + strandat 260.365 kb on - strandat 260.365 kb on - strandat 260.365 kb on - strandat 260.365 kb on - strandat 260.365 kb on - strandat 260.365 kb on - strandat 260.367 kb on + strandat 260.368 kb on - strandat 260.368 kb on - strandat 260.369 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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257,727 + GFF229 0.54 -0.8
257,727 + GFF229 0.54 +0.0
257,728 - GFF229 0.54 -0.2
257,728 - GFF229 0.54 +0.2
257,728 - GFF229 0.54 -1.7
257,790 + GFF229 0.57 -1.2
257,790 + GFF229 0.57 -0.1
257,790 + GFF229 0.57 -0.7
257,791 - GFF229 0.57 -1.4
257,791 - GFF229 0.57 -1.1
257,791 - GFF229 0.57 -2.0
257,791 - GFF229 0.57 +0.0
257,856 + GFF229 0.61 -0.6
257,874 + GFF229 0.62 -0.9
257,874 + GFF229 0.62 -0.4
257,874 + GFF229 0.62 -0.2
257,874 + GFF229 0.62 -0.1
257,874 + GFF229 0.62 -0.0
257,875 - GFF229 0.62 +0.2
257,875 - GFF229 0.62 +0.0
257,875 - GFF229 0.62 -2.5
257,875 - GFF229 0.62 -0.2
257,875 - GFF229 0.62 +0.7
257,875 - GFF229 0.62 +0.1
257,875 - GFF229 0.62 +0.2
257,875 - GFF229 0.62 -0.9
257,875 - GFF229 0.62 +0.3
257,913 + GFF229 0.64 -2.4
257,913 + GFF229 0.64 -0.3
257,913 + GFF229 0.64 +1.6
257,913 + GFF229 0.64 -0.6
257,913 + GFF229 0.64 -0.7
257,913 + GFF229 0.64 -0.4
257,913 + GFF229 0.64 -1.5
257,914 - GFF229 0.64 -0.4
257,914 - GFF229 0.64 -1.5
257,914 - GFF229 0.64 -0.0
257,914 - GFF229 0.64 -0.5
258,114 + GFF229 0.75 -0.9
258,114 + GFF229 0.75 +0.8
258,115 - GFF229 0.75 -0.5
258,115 - GFF229 0.75 -0.8
258,115 - GFF229 0.75 -0.7
258,129 + GFF229 0.76 -1.1
258,129 + GFF229 0.76 -0.6
258,129 + GFF229 0.76 -0.8
258,129 + GFF229 0.76 +0.8
258,129 + GFF229 0.76 +0.2
258,130 - GFF229 0.76 -1.2
258,150 + GFF229 0.77 -0.6
258,150 + GFF229 0.77 -1.3
258,151 - GFF229 0.77 +0.2
258,151 - GFF229 0.77 -1.0
258,151 - GFF229 0.77 +0.0
258,151 - GFF229 0.77 +0.6
258,151 - GFF229 0.77 -0.0
258,151 - GFF229 0.77 -0.5
258,372 + GFF229 0.89 -0.2
258,372 + GFF229 0.89 -0.5
258,372 + GFF229 0.89 -0.2
258,372 + GFF229 0.89 +0.1
258,372 + GFF229 0.89 -0.7
258,372 + GFF229 0.89 -0.6
258,372 + GFF229 0.89 -0.7
258,372 + GFF229 0.89 -1.5
258,373 - GFF229 0.90 -1.5
258,373 - GFF229 0.90 -0.3
258,373 - GFF229 0.90 -0.4
258,373 - GFF229 0.90 -1.4
258,373 - GFF229 0.90 +1.2
258,373 - GFF229 0.90 -0.4
258,447 + +0.0
258,447 + -0.0
258,447 + +0.6
258,474 + +0.0
258,474 + -1.2
258,475 - -1.1
258,498 + -0.7
258,498 + -2.1
258,498 + -2.0
258,498 + -0.8
258,498 + -0.8
258,499 - -0.9
258,499 - +1.2
258,499 - -0.2
258,499 - -0.8
258,501 - +0.2
258,641 - -1.4
258,641 - -0.8
258,664 - -1.6
259,036 - GFF230 0.56 -1.8
259,335 + -0.8
259,381 - +1.7
259,427 + +0.2
259,431 + -0.4
259,431 + +1.2
259,431 + -0.6
259,431 + -0.0
259,431 + +0.3
259,431 + +0.6
259,431 + -2.0
259,432 - +0.1
259,432 - +0.3
259,432 - -0.4
259,432 - -0.3
259,438 + +0.5
259,438 + -0.3
259,438 + -0.7
259,438 + -0.1
259,439 - -0.4
259,439 - -0.1
259,439 - +0.1
259,439 - -0.7
259,547 + GFF231 0.12 -1.2
259,548 - GFF231 0.12 -0.5
259,548 - GFF231 0.12 -0.6
259,592 + GFF231 0.17 -0.5
259,593 - GFF231 0.18 -1.1
259,593 - GFF231 0.18 -0.4
259,611 - GFF231 0.20 +0.1
259,611 - GFF231 0.20 +0.2
259,611 - GFF231 0.20 -0.3
259,611 - GFF231 0.20 +0.5
260,216 + +0.4
260,216 + -0.7
260,216 + -1.2
260,217 - +1.7
260,217 - -1.1
260,334 + -0.1
260,334 + -1.2
260,334 + -0.5
260,334 + -0.4
260,334 + -0.3
260,334 + -0.3
260,334 + -0.4
260,335 - +0.1
260,335 - -0.6
260,335 - +0.2
260,364 + -1.8
260,364 + +0.8
260,365 - -0.3
260,365 - +1.4
260,365 - +0.4
260,365 - +0.5
260,365 - +0.1
260,365 - +0.1
260,367 + -2.1
260,368 - -0.2
260,368 - -0.8
260,369 - -1.8

Or see this region's nucleotide sequence