Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2208 and GFF2209 are separated by 4 nucleotides GFF2209 and GFF2210 are separated by 40 nucleotides
GFF2208 - Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily, at 269,527 to 270,840
GFF2208
GFF2209 - hypothetical protein, at 270,845 to 272,128
GFF2209
GFF2210 - Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly, at 272,169 to 273,560
GFF2210
Position (kb) 270
271
272
273 Strain fitness (log2 ratio) -2
-1
0
1
2 at 270.100 kb on + strand, within GFF2208 at 270.100 kb on + strand, within GFF2208 at 270.101 kb on - strand, within GFF2208 at 270.132 kb on - strand, within GFF2208 at 270.132 kb on - strand, within GFF2208 at 270.132 kb on - strand, within GFF2208 at 270.132 kb on - strand, within GFF2208 at 270.506 kb on + strand, within GFF2208 at 270.506 kb on + strand, within GFF2208 at 270.506 kb on + strand, within GFF2208 at 270.506 kb on + strand, within GFF2208 at 270.506 kb on + strand, within GFF2208 at 270.506 kb on + strand, within GFF2208 at 270.506 kb on + strand, within GFF2208 at 270.506 kb on + strand, within GFF2208 at 270.506 kb on + strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.824 kb on + strand at 270.942 kb on + strand at 270.942 kb on + strand at 270.942 kb on + strand at 270.942 kb on + strand at 270.942 kb on + strand at 270.942 kb on + strand at 270.942 kb on + strand at 270.942 kb on + strand at 270.943 kb on - strand at 270.943 kb on - strand at 270.943 kb on - strand at 270.943 kb on - strand at 270.943 kb on - strand at 270.943 kb on - strand at 270.943 kb on - strand at 270.943 kb on - strand at 270.943 kb on - strand at 270.943 kb on - strand at 271.524 kb on + strand, within GFF2209 at 272.083 kb on - strand at 272.083 kb on - strand at 272.083 kb on - strand at 272.218 kb on + strand at 272.218 kb on + strand at 272.218 kb on + strand at 272.218 kb on + strand at 272.350 kb on + strand, within GFF2210 at 272.350 kb on + strand, within GFF2210 at 272.504 kb on + strand, within GFF2210 at 272.548 kb on + strand, within GFF2210 at 272.549 kb on - strand, within GFF2210 at 272.549 kb on - strand, within GFF2210 at 272.644 kb on + strand, within GFF2210 at 272.644 kb on + strand, within GFF2210 at 272.644 kb on + strand, within GFF2210 at 272.645 kb on - strand, within GFF2210 at 272.751 kb on + strand, within GFF2210 at 272.772 kb on - strand, within GFF2210 at 272.772 kb on - strand, within GFF2210 at 272.799 kb on + strand, within GFF2210 at 272.800 kb on - strand, within GFF2210 at 272.898 kb on + strand, within GFF2210 at 272.898 kb on + strand, within GFF2210 at 272.986 kb on - strand, within GFF2210 at 272.986 kb on - strand, within GFF2210 at 272.986 kb on - strand, within GFF2210 at 272.986 kb on - strand, within GFF2210 at 273.109 kb on - strand, within GFF2210
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 270,100 + GFF2208 0.44 +1.0 270,100 + GFF2208 0.44 -0.1 270,101 - GFF2208 0.44 -0.0 270,132 - GFF2208 0.46 -2.4 270,132 - GFF2208 0.46 -0.4 270,132 - GFF2208 0.46 +0.8 270,132 - GFF2208 0.46 -0.3 270,506 + GFF2208 0.75 -0.3 270,506 + GFF2208 0.75 -0.7 270,506 + GFF2208 0.75 +0.3 270,506 + GFF2208 0.75 -0.2 270,506 + GFF2208 0.75 -1.5 270,506 + GFF2208 0.75 +1.5 270,506 + GFF2208 0.75 +0.0 270,506 + GFF2208 0.75 +0.0 270,506 + GFF2208 0.75 +0.7 270,507 - GFF2208 0.75 +0.6 270,507 - GFF2208 0.75 -0.4 270,507 - GFF2208 0.75 +0.6 270,507 - GFF2208 0.75 +0.3 270,507 - GFF2208 0.75 +1.8 270,507 - GFF2208 0.75 +0.4 270,507 - GFF2208 0.75 -0.6 270,507 - GFF2208 0.75 -0.1 270,507 - GFF2208 0.75 -0.1 270,507 - GFF2208 0.75 -0.4 270,507 - GFF2208 0.75 -0.4 270,824 + -1.4 270,942 + -0.3 270,942 + -0.5 270,942 + +1.7 270,942 + -0.7 270,942 + -0.6 270,942 + -0.7 270,942 + -0.2 270,942 + +0.6 270,943 - -0.1 270,943 - +0.6 270,943 - +0.2 270,943 - +0.1 270,943 - +0.1 270,943 - -0.7 270,943 - +0.6 270,943 - -0.6 270,943 - -0.7 270,943 - -0.2 271,524 + GFF2209 0.53 -0.3 272,083 - -0.4 272,083 - -0.2 272,083 - +0.4 272,218 + +0.3 272,218 + -0.2 272,218 + -0.6 272,218 + -0.2 272,350 + GFF2210 0.13 -0.5 272,350 + GFF2210 0.13 -0.5 272,504 + GFF2210 0.24 -0.6 272,548 + GFF2210 0.27 -0.2 272,549 - GFF2210 0.27 -0.8 272,549 - GFF2210 0.27 -0.3 272,644 + GFF2210 0.34 -0.7 272,644 + GFF2210 0.34 -0.2 272,644 + GFF2210 0.34 +0.1 272,645 - GFF2210 0.34 -1.5 272,751 + GFF2210 0.42 +0.7 272,772 - GFF2210 0.43 -0.9 272,772 - GFF2210 0.43 +0.2 272,799 + GFF2210 0.45 -1.8 272,800 - GFF2210 0.45 +0.4 272,898 + GFF2210 0.52 -0.6 272,898 + GFF2210 0.52 -1.2 272,986 - GFF2210 0.59 -1.7 272,986 - GFF2210 0.59 +0.0 272,986 - GFF2210 0.59 +0.8 272,986 - GFF2210 0.59 -1.3 273,109 - GFF2210 0.68 +1.0
Or see this region's nucleotide sequence