Strain Fitness in Variovorax sp. SCN45 around GFF2092

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
139,230	-		GFF2091	0.25	-0.3
139,535	+		GFF2091	0.57	-0.8
139,535	+		GFF2091	0.57	-0.5
139,535	+		GFF2091	0.57	+1.2
139,823	+		GFF2091	0.87	-0.8
139,823	+		GFF2091	0.87	-0.9
139,824	-		GFF2091	0.87	-0.3
139,946	+				+0.0
139,946	+				+0.5
140,061	-				+0.3
140,061	-				+0.1
140,113	+				-0.1
140,113	+				+0.1
140,113	+				-2.3
140,113	+				-1.1
140,114	-				+0.3
140,114	-				+0.2
140,114	-				-0.2
140,116	+				-0.0
140,116	+				+0.5
140,116	+				-0.9
140,116	+				-0.8
140,116	+				-1.3
140,116	+				-2.3
140,117	-				+0.4
140,117	-				-0.4
140,117	-				+0.8
140,359	+		GFF2093	0.17	-2.9
140,359	+		GFF2093	0.17	+0.1
140,359	+		GFF2093	0.17	+0.7
140,359	+		GFF2093	0.17	-0.3
140,359	+		GFF2093	0.17	-0.4
140,359	+		GFF2093	0.17	+0.7
140,359	+		GFF2093	0.17	-1.6
140,359	+		GFF2093	0.17	-1.3
140,359	+		GFF2093	0.17	+0.0
140,359	+		GFF2093	0.17	-0.4
140,359	+		GFF2093	0.17	+0.6
140,359	+		GFF2093	0.17	+1.7
140,360	-		GFF2093	0.17	-0.2
140,360	-		GFF2093	0.17	-0.3
140,360	-		GFF2093	0.17	+0.9
140,360	-		GFF2093	0.17	+4.0
140,360	-		GFF2093	0.17	-0.1
140,360	-		GFF2093	0.17	+0.5
140,360	-		GFF2093	0.17	+0.4
140,360	-		GFF2093	0.17	+0.8
140,360	-		GFF2093	0.17	+0.2
140,360	-		GFF2093	0.17	-0.5
140,443	+		GFF2093	0.22	+0.5
140,443	+		GFF2093	0.22	+0.0
140,443	+		GFF2093	0.22	-1.1
140,443	+		GFF2093	0.22	-1.3
140,443	+		GFF2093	0.22	+1.7
140,443	+		GFF2093	0.22	+0.0
140,444	-		GFF2093	0.22	-0.2
140,444	-		GFF2093	0.22	+0.7
140,511	+		GFF2093	0.25	-0.3
140,511	+		GFF2093	0.25	+0.5
140,511	+		GFF2093	0.25	-0.9
140,511	+		GFF2093	0.25	+0.7
140,512	-		GFF2093	0.26	+0.2
140,512	-		GFF2093	0.26	-0.4
140,512	-		GFF2093	0.26	-0.1
140,512	-		GFF2093	0.26	+0.3
140,641	+		GFF2093	0.33	+0.0
140,641	+		GFF2093	0.33	-0.6
140,641	+		GFF2093	0.33	-0.4
140,641	+		GFF2093	0.33	-0.1
140,641	+		GFF2093	0.33	-1.0
140,641	+		GFF2093	0.33	-0.5
140,641	+		GFF2093	0.33	-0.3
140,642	-		GFF2093	0.33	+0.1
140,642	-		GFF2093	0.33	-0.4
140,642	-		GFF2093	0.33	+0.1
140,706	+		GFF2093	0.37	-0.6
140,706	+		GFF2093	0.37	-1.2
140,706	+		GFF2093	0.37	-0.1
140,706	+		GFF2093	0.37	+0.5
140,707	-		GFF2093	0.37	-0.2
140,707	-		GFF2093	0.37	-1.1
141,046	+		GFF2093	0.56	+0.7
141,046	+		GFF2093	0.56	-1.1
141,046	+		GFF2093	0.56	-0.5
141,046	+		GFF2093	0.56	+0.5
141,047	-		GFF2093	0.56	+0.2
141,047	-		GFF2093	0.56	+0.1
141,047	-		GFF2093	0.56	+0.2