Strain Fitness in Variovorax sp. SCN45 around GFF2066

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
113,561	+		GFF2065	0.49	-1.1
113,561	+		GFF2065	0.49	+0.8
113,561	+		GFF2065	0.49	-0.8
113,561	+		GFF2065	0.49	-0.1
113,561	+		GFF2065	0.49	+0.2
113,562	-		GFF2065	0.49	+0.6
113,562	-		GFF2065	0.49	-1.5
113,562	-		GFF2065	0.49	-0.3
113,562	-		GFF2065	0.49	+0.1
113,562	-		GFF2065	0.49	+1.0
113,562	-		GFF2065	0.49	-0.9
113,562	-		GFF2065	0.49	-0.3
113,562	-		GFF2065	0.49	+0.5
113,562	-		GFF2065	0.49	+0.5
113,562	-		GFF2065	0.49	-1.4
113,562	-		GFF2065	0.49	-0.4
113,562	-		GFF2065	0.49	-0.4
113,562	-		GFF2065	0.49	-0.4
113,562	-		GFF2065	0.49	-0.2
113,688	+		GFF2065	0.58	-0.1
113,688	+		GFF2065	0.58	-0.6
113,688	+		GFF2065	0.58	-0.6
113,688	+		GFF2065	0.58	-0.6
113,688	+		GFF2065	0.58	+0.5
113,688	+		GFF2065	0.58	-1.6
113,688	+		GFF2065	0.58	-2.6
113,689	-		GFF2065	0.58	-1.6
113,689	-		GFF2065	0.58	+0.1
113,689	-		GFF2065	0.58	-1.1
113,689	-		GFF2065	0.58	+0.1
113,689	-		GFF2065	0.58	+0.5
113,689	-		GFF2065	0.58	+0.3
113,689	-		GFF2065	0.58	-0.8
113,689	-		GFF2065	0.58	-0.5
113,780	+		GFF2065	0.65	-0.2
113,780	+		GFF2065	0.65	-1.1
113,780	+		GFF2065	0.65	+0.3
113,780	+		GFF2065	0.65	-0.6
113,780	+		GFF2065	0.65	-0.3
113,780	+		GFF2065	0.65	-0.5
113,780	+		GFF2065	0.65	-1.3
113,780	+		GFF2065	0.65	-0.2
113,781	-		GFF2065	0.65	+0.1
113,781	-		GFF2065	0.65	-0.1
113,781	-		GFF2065	0.65	-0.4
113,781	-		GFF2065	0.65	-0.5
113,781	-		GFF2065	0.65	-0.3
113,781	-		GFF2065	0.65	-0.7
114,182	+				-0.2
114,182	+				+0.4
114,182	+				+0.2
114,183	-				+0.4
114,183	-				+0.9
114,183	-				+1.1
114,183	-				-0.0
114,183	-				+0.5
114,183	-				-0.9
114,183	-				-0.0
114,183	-				-0.3
114,183	-				+0.9
114,195	+				+0.3
114,195	+				-0.7
114,195	+				-0.4
114,195	+				+0.4
114,195	+				+0.7
114,195	+				-1.3
114,195	+				-0.3
114,195	+				+1.1
114,195	+				-0.8
114,195	+				-0.4
114,195	+				-0.3
114,195	+				-1.2
114,195	+				-0.2
114,195	+				+1.7
114,195	+				+0.1
114,195	+				+0.7
114,195	+				-0.1
114,195	+				+0.1
114,195	+				-0.2
114,196	-				+1.1
114,196	-				+0.1
114,196	-				+0.1
114,196	-				+0.7
114,196	-				+0.2
114,196	-				+0.3
114,196	-				-0.9
114,196	-				-0.5
114,196	-				+0.6
114,196	-				+0.1
114,196	-				-0.2
114,196	-				-0.5
114,196	-				-1.5
114,196	-				-0.6
114,196	-				-0.9
114,196	-				+0.3
114,196	-				-0.5
114,196	-				+0.0
114,196	-				-0.6
114,196	-				-1.1
114,196	-				-0.2
114,196	-				-1.0
114,196	-				-0.2
114,196	-				+3.1
114,196	-				+1.3
114,196	-				+0.3
114,196	-				+0.3
114,196	-				-0.4
114,196	-				-0.2
114,196	-				-0.5
114,196	-				-0.3
114,196	-				-0.0
114,196	-				-1.6
114,196	-				-1.0
114,196	-				+0.6
114,196	-				+2.1
114,196	-				-0.5
114,196	-				+0.2
114,196	-				-0.3
114,196	-				-0.0
114,196	-				-1.1
114,196	-				+0.3
114,196	-				+0.2
114,196	-				-0.5
114,197	+				-1.9
114,197	+				-0.0
114,197	+				-0.5
114,197	+				-0.3
114,197	+				+0.3
114,197	+				+0.6
114,197	+				-1.5
114,197	+				-0.5
114,197	+				+0.5
114,197	+				-0.2
114,198	-				-0.1
114,198	-				+0.2
114,198	-				-0.5
114,198	-				-0.8
114,198	-				-0.5
114,198	-				+0.4
114,198	-				-0.3
114,198	-				-0.5
114,198	-				-0.8
114,198	-				-0.0
114,198	-				+0.5
114,198	-				-1.3
114,198	-				-0.1
114,198	-				-0.3
114,297	+				-0.5
114,297	+				+0.6
114,297	+				+0.5
114,298	-				-0.2
114,341	+				-0.3
114,341	+				-0.5
114,343	+				-0.1
114,372	+				-0.1
114,372	+				+0.2
114,372	+				-0.3
114,372	+				+1.7
114,372	+				-0.1
114,372	+				-0.1
114,372	+				+0.4
114,372	+				+0.4
114,372	+				+0.1
114,372	+				-0.2
114,372	+				+0.4
114,372	+				-0.3
114,372	+				-0.9
114,372	+				-0.1
114,373	-				+0.8
114,373	-				+2.4
114,373	-				-0.6
114,373	-				+0.3
114,373	-				+0.7
114,373	-				-0.3
114,373	-				-2.3
114,373	-				-1.6
114,373	-				-0.3
114,374	+				+0.3
114,374	+				+0.2
114,374	+				+1.3
114,374	+				+0.0
114,375	-				-0.8
114,375	-				-1.1
114,375	-				-0.7
114,375	-				-0.5
114,375	-				-0.2
114,375	-				+0.4
114,411	+				+0.1
114,427	+				-0.7
114,427	+				+0.2
114,427	+				+0.1
114,428	-				+2.3
115,960	+		GFF2067	0.50	+0.0
115,960	+		GFF2067	0.50	-1.6
115,960	+		GFF2067	0.50	+1.2
115,960	+		GFF2067	0.50	-0.2
115,960	+		GFF2067	0.50	-0.4
115,961	-		GFF2067	0.50	-0.2
115,961	-		GFF2067	0.50	+0.6
115,961	-		GFF2067	0.50	-2.1
115,961	-		GFF2067	0.50	-0.4
115,961	-		GFF2067	0.50	-0.3
115,961	-		GFF2067	0.50	-0.1
115,961	-		GFF2067	0.50	+0.0
115,961	-		GFF2067	0.50	-0.2
115,961	-		GFF2067	0.50	-0.3
115,961	-		GFF2067	0.50	-0.1
115,961	-		GFF2067	0.50	-0.6
115,961	-		GFF2067	0.50	-0.7
115,961	-		GFF2067	0.50	-2.9
115,969	+		GFF2067	0.51	+0.1
115,969	+		GFF2067	0.51	-0.2
115,969	+		GFF2067	0.51	-0.1
115,969	+		GFF2067	0.51	+0.1
115,970	-		GFF2067	0.51	+0.9
115,970	-		GFF2067	0.51	+1.3
115,970	-		GFF2067	0.51	+1.3
115,970	-		GFF2067	0.51	-0.1
116,093	-		GFF2067	0.71	+0.1
116,093	-		GFF2067	0.71	+1.1
116,093	-		GFF2067	0.71	-0.5
116,093	-		GFF2067	0.71	-0.2