Strain Fitness in Variovorax sp. SCN45 around GFF1981

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
24,886	+				+0.3
24,887	-				-0.6
25,178	+		GFF1982	0.54	-0.4
25,178	+		GFF1982	0.54	+0.4
25,178	+		GFF1982	0.54	-1.3
25,178	+		GFF1982	0.54	-1.2
25,178	+		GFF1982	0.54	-1.6
25,178	+		GFF1982	0.54	+0.7
25,178	+		GFF1982	0.54	+0.3
25,179	-		GFF1982	0.54	-0.3
25,179	-		GFF1982	0.54	-0.6
25,179	-		GFF1982	0.54	+0.8
25,179	-		GFF1982	0.54	+0.4
25,179	-		GFF1982	0.54	-0.3
25,179	-		GFF1982	0.54	+0.1
25,179	-		GFF1982	0.54	-1.3
25,179	-		GFF1982	0.54	-1.4
25,347	-		GFF1982	0.87	-0.3
25,669	+		GFF1983	0.45	-0.2
25,669	+		GFF1983	0.45	-0.7
25,669	+		GFF1983	0.45	-0.9
25,669	+		GFF1983	0.45	+0.0
25,669	+		GFF1983	0.45	+0.2
25,669	+		GFF1983	0.45	-0.5
25,669	+		GFF1983	0.45	-0.7
25,670	-		GFF1983	0.45	-0.8
25,670	-		GFF1983	0.45	-0.2
25,670	-		GFF1983	0.45	+0.4
25,670	-		GFF1983	0.45	+0.1
25,670	-		GFF1983	0.45	+1.7
25,670	-		GFF1983	0.45	+0.2
25,670	-		GFF1983	0.45	-1.1