Strain Fitness in Variovorax sp. SCN45 around GFF1979

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
20,510	+				-0.9
20,583	-		GFF1978	0.12	+0.3
20,690	+		GFF1978	0.26	+0.6
20,690	+		GFF1978	0.26	-0.5
20,691	-		GFF1978	0.26	+0.0
20,691	-		GFF1978	0.26	-0.9
20,705	+		GFF1978	0.27	+0.1
20,705	+		GFF1978	0.27	+1.1
20,706	-		GFF1978	0.28	+1.4
20,706	-		GFF1978	0.28	-0.6
20,706	-		GFF1978	0.28	-0.7
20,747	+		GFF1978	0.33	-0.8
20,748	-		GFF1978	0.33	-1.1
21,217	+				-0.0
21,217	+				-0.4
21,217	+				+0.0
21,378	+				-1.2
21,410	+				+0.4
21,411	-				-0.7