Strain Fitness in Variovorax sp. SCN45 around GFF1973

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
16,186	+		GFF1973	0.13	+0.1
16,186	+		GFF1973	0.13	+0.9
16,187	-		GFF1973	0.14	-2.0
16,198	+		GFF1973	0.15	-0.0
16,199	-		GFF1973	0.16	+0.1
16,199	-		GFF1973	0.16	-1.9
16,237	+		GFF1973	0.22	+0.9
16,237	+		GFF1973	0.22	-0.1
16,237	+		GFF1973	0.22	+0.0
16,238	-		GFF1973	0.22	-0.8
16,238	-		GFF1973	0.22	+1.5
16,238	-		GFF1973	0.22	+0.4
16,238	-		GFF1973	0.22	-0.0
16,273	+		GFF1973	0.28	+1.4
16,273	+		GFF1973	0.28	-0.5
16,273	+		GFF1973	0.28	+0.1
16,273	+		GFF1973	0.28	-0.7
16,273	+		GFF1973	0.28	+1.3
16,273	+		GFF1973	0.28	-0.3
16,273	+		GFF1973	0.28	+0.8
16,273	+		GFF1973	0.28	+0.4
16,273	+		GFF1973	0.28	+0.2
16,273	+		GFF1973	0.28	-0.0
16,273	+		GFF1973	0.28	+0.6
16,273	+		GFF1973	0.28	-0.4
16,273	+		GFF1973	0.28	+0.0
16,274	-		GFF1973	0.28	+0.4
16,274	-		GFF1973	0.28	+1.4
16,274	-		GFF1973	0.28	+0.1
16,274	-		GFF1973	0.28	-0.3
16,274	-		GFF1973	0.28	+0.3
16,274	-		GFF1973	0.28	+0.4
16,274	-		GFF1973	0.28	-0.8
16,274	-		GFF1973	0.28	-0.2
16,274	-		GFF1973	0.28	-0.5
16,274	-		GFF1973	0.28	+0.5
16,274	-		GFF1973	0.28	+0.3
16,274	-		GFF1973	0.28	+0.2
16,274	-		GFF1973	0.28	+0.5
16,274	-		GFF1973	0.28	-1.2
16,274	-		GFF1973	0.28	+0.3
16,274	-		GFF1973	0.28	+0.3
16,274	-		GFF1973	0.28	+0.2
16,300	+		GFF1973	0.33	+0.8
16,300	+		GFF1973	0.33	+0.0
16,301	-		GFF1973	0.33	+1.0
16,406	-		GFF1973	0.51	-0.7
16,489	+		GFF1973	0.65	+1.4
16,489	+		GFF1973	0.65	+0.3
16,528	+		GFF1973	0.72	-0.5
16,576	+		GFF1973	0.80	+0.9
16,576	+		GFF1973	0.80	+0.0
16,676	-				-1.7
16,711	+				+0.6
16,711	+				+0.2
16,712	-				+0.2
16,734	-				+1.1
16,734	-				-0.1
16,864	-				-2.2
16,864	-				+0.2
16,864	-				+0.0
16,864	-				-0.7
17,053	+		GFF1974	0.58	+0.2
17,053	+		GFF1974	0.58	-0.3
17,053	+		GFF1974	0.58	-0.2
17,053	+		GFF1974	0.58	-0.5
17,059	+		GFF1974	0.60	-0.6
17,108	-		GFF1974	0.75	+0.1
17,185	+				-0.2
17,185	+				-1.8
17,185	+				+0.5
17,186	-				-0.3
17,186	-				+0.5
17,186	-				-0.1
17,311	+				-0.6
17,311	+				-0.5
17,312	-				-0.1
17,312	-				+1.1
17,401	+		GFF1975	0.17	-1.9
17,401	+		GFF1975	0.17	-1.3
17,437	+		GFF1975	0.20	+1.0
17,438	-		GFF1975	0.20	-0.1
17,438	-		GFF1975	0.20	-0.2
17,438	-		GFF1975	0.20	+0.1
17,443	+		GFF1975	0.21	-0.6
17,582	-		GFF1975	0.33	+1.0
17,620	+		GFF1975	0.37	-0.3
17,620	+		GFF1975	0.37	-0.3
17,620	+		GFF1975	0.37	+0.2
17,620	+		GFF1975	0.37	+0.8
17,620	+		GFF1975	0.37	+0.1
17,621	-		GFF1975	0.37	-0.3
17,621	-		GFF1975	0.37	+0.3
17,621	-		GFF1975	0.37	+1.0
17,621	-		GFF1975	0.37	-0.4