Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1903 and GFF1904 are separated by 39 nucleotides GFF1904 and GFF1905 are separated by 55 nucleotides GFF1905 and GFF1906 are separated by 21 nucleotides
GFF1903 - Acyl-homoserine lactone acylase PvdQ (EC 3.5.1.-), quorum-quenching, at 582,120 to 584,678
GFF1903
GFF1904 - Uncharacterized MFS-type transporter, at 584,718 to 586,010
GFF1904
GFF1905 - hypothetical protein, at 586,066 to 586,815
GFF1905
GFF1906 - no description, at 586,837 to 587,694
GFF1906
Position (kb) 584
585
586
587 Strain fitness (log2 ratio) -2
-1
0
1 at 583.728 kb on + strand, within GFF1903 at 583.729 kb on - strand, within GFF1903 at 583.752 kb on + strand, within GFF1903 at 583.753 kb on - strand, within GFF1903 at 583.887 kb on + strand, within GFF1903 at 583.887 kb on + strand, within GFF1903 at 583.887 kb on + strand, within GFF1903 at 583.888 kb on - strand, within GFF1903 at 584.185 kb on - strand, within GFF1903 at 584.185 kb on - strand, within GFF1903 at 584.377 kb on - strand, within GFF1903 at 584.400 kb on + strand, within GFF1903 at 584.400 kb on + strand, within GFF1903 at 584.401 kb on - strand, within GFF1903 at 584.446 kb on - strand at 584.478 kb on + strand at 584.478 kb on + strand at 584.478 kb on + strand at 584.478 kb on + strand at 584.478 kb on + strand at 584.478 kb on + strand at 584.478 kb on + strand at 584.478 kb on + strand at 584.479 kb on - strand at 584.479 kb on - strand at 584.479 kb on - strand at 584.479 kb on - strand at 584.479 kb on - strand at 584.479 kb on - strand at 584.479 kb on - strand at 584.479 kb on - strand at 584.578 kb on - strand at 584.578 kb on - strand at 584.589 kb on + strand at 584.590 kb on - strand at 584.677 kb on - strand at 584.864 kb on - strand, within GFF1904 at 585.199 kb on + strand, within GFF1904 at 585.199 kb on + strand, within GFF1904 at 585.199 kb on + strand, within GFF1904 at 585.199 kb on + strand, within GFF1904 at 585.199 kb on + strand, within GFF1904 at 585.199 kb on + strand, within GFF1904 at 585.200 kb on - strand, within GFF1904 at 585.200 kb on - strand, within GFF1904 at 585.200 kb on - strand, within GFF1904 at 585.817 kb on + strand, within GFF1904 at 585.818 kb on - strand, within GFF1904 at 586.325 kb on + strand, within GFF1905 at 586.325 kb on + strand, within GFF1905 at 586.326 kb on - strand, within GFF1905 at 586.382 kb on - strand, within GFF1905 at 586.382 kb on - strand, within GFF1905 at 586.382 kb on - strand, within GFF1905 at 586.571 kb on + strand, within GFF1905 at 586.571 kb on + strand, within GFF1905 at 586.572 kb on - strand, within GFF1905 at 586.724 kb on + strand, within GFF1905 at 586.725 kb on - strand, within GFF1905 at 586.861 kb on + strand at 586.861 kb on + strand at 586.862 kb on - strand at 586.862 kb on - strand at 586.862 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 583,728 + GFF1903 0.63 +0.3 583,729 - GFF1903 0.63 +0.1 583,752 + GFF1903 0.64 -0.1 583,753 - GFF1903 0.64 -0.1 583,887 + GFF1903 0.69 +0.3 583,887 + GFF1903 0.69 -0.1 583,887 + GFF1903 0.69 -0.2 583,888 - GFF1903 0.69 +0.5 584,185 - GFF1903 0.81 -0.1 584,185 - GFF1903 0.81 -0.6 584,377 - GFF1903 0.88 -0.7 584,400 + GFF1903 0.89 +0.3 584,400 + GFF1903 0.89 -0.6 584,401 - GFF1903 0.89 -0.7 584,446 - -0.3 584,478 + -1.3 584,478 + -0.3 584,478 + +0.7 584,478 + +0.8 584,478 + -0.6 584,478 + -0.2 584,478 + -1.9 584,478 + -1.1 584,479 - -0.9 584,479 - +1.3 584,479 - +0.7 584,479 - -0.4 584,479 - -1.7 584,479 - -0.3 584,479 - +0.2 584,479 - -0.1 584,578 - -0.6 584,578 - +0.8 584,589 + -0.0 584,590 - -0.6 584,677 - -0.0 584,864 - GFF1904 0.11 +0.3 585,199 + GFF1904 0.37 -0.7 585,199 + GFF1904 0.37 -1.4 585,199 + GFF1904 0.37 +0.4 585,199 + GFF1904 0.37 +0.8 585,199 + GFF1904 0.37 +1.1 585,199 + GFF1904 0.37 +0.7 585,200 - GFF1904 0.37 -0.4 585,200 - GFF1904 0.37 -0.3 585,200 - GFF1904 0.37 -0.2 585,817 + GFF1904 0.85 -0.9 585,818 - GFF1904 0.85 +0.4 586,325 + GFF1905 0.35 -0.1 586,325 + GFF1905 0.35 -0.6 586,326 - GFF1905 0.35 +0.3 586,382 - GFF1905 0.42 +0.1 586,382 - GFF1905 0.42 -0.5 586,382 - GFF1905 0.42 +0.3 586,571 + GFF1905 0.67 -0.0 586,571 + GFF1905 0.67 -0.2 586,572 - GFF1905 0.67 +0.2 586,724 + GFF1905 0.88 +0.2 586,725 - GFF1905 0.88 +0.1 586,861 + -0.3 586,861 + -0.5 586,862 - -0.8 586,862 - -1.8 586,862 - -1.3
Or see this region's nucleotide sequence