Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1861 and GFF1862 are separated by 82 nucleotides GFF1862 and GFF1863 overlap by 40 nucleotides
GFF1861 - Transcriptional regulator, IclR family, at 535,500 to 536,324
GFF1861
GFF1862 - Adenosine deaminase (EC 3.5.4.4), at 536,407 to 537,468
GFF1862
GFF1863 - Uncharacterized MFS-type transporter, at 537,429 to 538,742
GFF1863
Position (kb) 536
537
538 Strain fitness (log2 ratio) -1
0
1
2
3 at 535.507 kb on + strand at 535.507 kb on + strand at 535.508 kb on - strand at 535.508 kb on - strand at 535.510 kb on - strand at 535.716 kb on + strand, within GFF1861 at 535.747 kb on - strand, within GFF1861 at 535.785 kb on + strand, within GFF1861 at 535.785 kb on + strand, within GFF1861 at 535.786 kb on - strand, within GFF1861 at 535.786 kb on - strand, within GFF1861 at 535.786 kb on - strand, within GFF1861 at 535.896 kb on + strand, within GFF1861 at 535.896 kb on + strand, within GFF1861 at 535.896 kb on + strand, within GFF1861 at 535.896 kb on + strand, within GFF1861 at 535.897 kb on - strand, within GFF1861 at 535.897 kb on - strand, within GFF1861 at 535.897 kb on - strand, within GFF1861 at 535.897 kb on - strand, within GFF1861 at 535.897 kb on - strand, within GFF1861 at 535.965 kb on + strand, within GFF1861 at 535.965 kb on + strand, within GFF1861 at 535.965 kb on + strand, within GFF1861 at 535.965 kb on + strand, within GFF1861 at 535.965 kb on + strand, within GFF1861 at 535.965 kb on + strand, within GFF1861 at 535.965 kb on + strand, within GFF1861 at 535.965 kb on + strand, within GFF1861 at 535.965 kb on + strand, within GFF1861 at 535.966 kb on - strand, within GFF1861 at 535.966 kb on - strand, within GFF1861 at 535.966 kb on - strand, within GFF1861 at 535.966 kb on - strand, within GFF1861 at 535.966 kb on - strand, within GFF1861 at 535.966 kb on - strand, within GFF1861 at 535.966 kb on - strand, within GFF1861 at 535.966 kb on - strand, within GFF1861 at 536.332 kb on - strand at 536.367 kb on + strand at 536.368 kb on - strand at 536.368 kb on - strand at 536.428 kb on + strand at 536.428 kb on + strand at 536.428 kb on + strand at 536.428 kb on + strand at 536.429 kb on - strand at 536.429 kb on - strand at 536.644 kb on + strand, within GFF1862 at 536.644 kb on + strand, within GFF1862 at 536.644 kb on + strand, within GFF1862 at 536.644 kb on + strand, within GFF1862 at 536.644 kb on + strand, within GFF1862 at 536.644 kb on + strand, within GFF1862 at 536.644 kb on + strand, within GFF1862 at 536.644 kb on + strand, within GFF1862 at 536.644 kb on + strand, within GFF1862 at 536.644 kb on + strand, within GFF1862 at 536.645 kb on - strand, within GFF1862 at 536.645 kb on - strand, within GFF1862 at 536.647 kb on + strand, within GFF1862 at 536.648 kb on - strand, within GFF1862 at 536.648 kb on - strand, within GFF1862 at 536.648 kb on - strand, within GFF1862 at 536.648 kb on - strand, within GFF1862 at 536.686 kb on + strand, within GFF1862 at 536.686 kb on + strand, within GFF1862 at 536.686 kb on + strand, within GFF1862 at 536.687 kb on - strand, within GFF1862 at 536.704 kb on + strand, within GFF1862 at 537.070 kb on + strand, within GFF1862 at 537.070 kb on + strand, within GFF1862 at 537.070 kb on + strand, within GFF1862 at 537.310 kb on + strand, within GFF1862 at 537.310 kb on + strand, within GFF1862 at 537.311 kb on - strand, within GFF1862 at 537.430 kb on + strand at 537.430 kb on + strand at 537.430 kb on + strand at 537.431 kb on - strand at 537.431 kb on - strand at 537.431 kb on - strand at 537.850 kb on + strand, within GFF1863 at 537.850 kb on + strand, within GFF1863 at 537.851 kb on - strand, within GFF1863 at 538.195 kb on + strand, within GFF1863 at 538.195 kb on + strand, within GFF1863 at 538.195 kb on + strand, within GFF1863 at 538.195 kb on + strand, within GFF1863 at 538.196 kb on - strand, within GFF1863 at 538.196 kb on - strand, within GFF1863
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 535,507 + +1.3 535,507 + +1.6 535,508 - +1.6 535,508 - +1.7 535,510 - +0.1 535,716 + GFF1861 0.26 +0.0 535,747 - GFF1861 0.30 +0.8 535,785 + GFF1861 0.35 +0.7 535,785 + GFF1861 0.35 +1.1 535,786 - GFF1861 0.35 +1.2 535,786 - GFF1861 0.35 +1.5 535,786 - GFF1861 0.35 +0.1 535,896 + GFF1861 0.48 +0.3 535,896 + GFF1861 0.48 +0.3 535,896 + GFF1861 0.48 +0.9 535,896 + GFF1861 0.48 +0.9 535,897 - GFF1861 0.48 +1.0 535,897 - GFF1861 0.48 +1.5 535,897 - GFF1861 0.48 +3.0 535,897 - GFF1861 0.48 +0.9 535,897 - GFF1861 0.48 +1.5 535,965 + GFF1861 0.56 +1.2 535,965 + GFF1861 0.56 +1.2 535,965 + GFF1861 0.56 +1.0 535,965 + GFF1861 0.56 +0.1 535,965 + GFF1861 0.56 +0.8 535,965 + GFF1861 0.56 +1.0 535,965 + GFF1861 0.56 +1.9 535,965 + GFF1861 0.56 +1.9 535,965 + GFF1861 0.56 +1.7 535,966 - GFF1861 0.56 +2.1 535,966 - GFF1861 0.56 +0.3 535,966 - GFF1861 0.56 +1.3 535,966 - GFF1861 0.56 +0.7 535,966 - GFF1861 0.56 +1.5 535,966 - GFF1861 0.56 +1.9 535,966 - GFF1861 0.56 +1.5 535,966 - GFF1861 0.56 +2.7 536,332 - +0.8 536,367 + -0.3 536,368 - +0.2 536,368 - +0.9 536,428 + -0.5 536,428 + -0.7 536,428 + +0.0 536,428 + +0.3 536,429 - +0.1 536,429 - -0.2 536,644 + GFF1862 0.22 +1.3 536,644 + GFF1862 0.22 +0.1 536,644 + GFF1862 0.22 +0.5 536,644 + GFF1862 0.22 -0.1 536,644 + GFF1862 0.22 -0.6 536,644 + GFF1862 0.22 +0.1 536,644 + GFF1862 0.22 +0.9 536,644 + GFF1862 0.22 -0.5 536,644 + GFF1862 0.22 +0.4 536,644 + GFF1862 0.22 -0.1 536,645 - GFF1862 0.22 +0.5 536,645 - GFF1862 0.22 -0.0 536,647 + GFF1862 0.23 +0.4 536,648 - GFF1862 0.23 +1.6 536,648 - GFF1862 0.23 +0.3 536,648 - GFF1862 0.23 -0.3 536,648 - GFF1862 0.23 -0.3 536,686 + GFF1862 0.26 +0.9 536,686 + GFF1862 0.26 -0.6 536,686 + GFF1862 0.26 +0.4 536,687 - GFF1862 0.26 +0.8 536,704 + GFF1862 0.28 -0.4 537,070 + GFF1862 0.62 -0.1 537,070 + GFF1862 0.62 -0.3 537,070 + GFF1862 0.62 +0.2 537,310 + GFF1862 0.85 +0.2 537,310 + GFF1862 0.85 +1.4 537,311 - GFF1862 0.85 +0.1 537,430 + +0.7 537,430 + -0.0 537,430 + +0.0 537,431 - -0.5 537,431 - -0.5 537,431 - +0.4 537,850 + GFF1863 0.32 +0.4 537,850 + GFF1863 0.32 +0.1 537,851 - GFF1863 0.32 -0.3 538,195 + GFF1863 0.58 -0.6 538,195 + GFF1863 0.58 +0.1 538,195 + GFF1863 0.58 +0.9 538,195 + GFF1863 0.58 +0.3 538,196 - GFF1863 0.58 -0.6 538,196 - GFF1863 0.58 -0.1
Or see this region's nucleotide sequence