Strain Fitness in Variovorax sp. SCN45 around GFF1849

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1848 and GFF1849 are separated by 18 nucleotidesGFF1849 and GFF1850 are separated by 88 nucleotidesGFF1850 and GFF1851 overlap by 8 nucleotides GFF1848 - Proteins incorrectly called adenylate cyclase, at 519,851 to 523,891 GFF1848 GFF1849 - FIG00347667: hypothetical protein, at 523,910 to 524,701 GFF1849 GFF1850 - Tetracenomycin polyketide synthesis O-methyltransferase TcmP, at 524,790 to 525,548 GFF1850 GFF1851 - TOMM biosynthesis cyclodehydratase (protein C) / TOMM biosynthesis docking scaffold (protein D), at 525,541 to 527,778 GFF1851 Position (kb) 523 524 525Strain fitness (log2 ratio) -2 -1 0 1 2at 522.935 kb on + strand, within GFF1848at 522.935 kb on + strand, within GFF1848at 522.935 kb on + strand, within GFF1848at 522.935 kb on + strand, within GFF1848at 522.935 kb on + strand, within GFF1848at 522.936 kb on - strand, within GFF1848at 522.936 kb on - strand, within GFF1848at 522.936 kb on - strand, within GFF1848at 522.936 kb on - strand, within GFF1848at 522.936 kb on - strand, within GFF1848at 522.936 kb on - strand, within GFF1848at 522.936 kb on - strand, within GFF1848at 522.936 kb on - strand, within GFF1848at 522.936 kb on - strand, within GFF1848at 522.936 kb on - strand, within GFF1848at 522.936 kb on - strand, within GFF1848at 522.936 kb on - strand, within GFF1848at 522.936 kb on - strand, within GFF1848at 523.043 kb on + strand, within GFF1848at 523.043 kb on + strand, within GFF1848at 523.043 kb on + strand, within GFF1848at 523.043 kb on + strand, within GFF1848at 523.043 kb on + strand, within GFF1848at 523.043 kb on + strand, within GFF1848at 523.043 kb on + strand, within GFF1848at 523.043 kb on + strand, within GFF1848at 523.043 kb on + strand, within GFF1848at 523.043 kb on + strand, within GFF1848at 523.043 kb on + strand, within GFF1848at 523.043 kb on + strand, within GFF1848at 523.043 kb on + strand, within GFF1848at 523.044 kb on - strand, within GFF1848at 523.044 kb on - strand, within GFF1848at 523.044 kb on - strand, within GFF1848at 523.044 kb on - strand, within GFF1848at 523.044 kb on - strand, within GFF1848at 523.118 kb on + strand, within GFF1848at 523.119 kb on - strand, within GFF1848at 523.307 kb on + strand, within GFF1848at 523.308 kb on - strand, within GFF1848at 523.523 kb on + strandat 523.523 kb on + strandat 523.523 kb on + strandat 523.523 kb on + strandat 523.523 kb on + strandat 523.523 kb on + strandat 523.523 kb on + strandat 523.523 kb on + strandat 523.524 kb on - strandat 523.524 kb on - strandat 523.524 kb on - strandat 523.524 kb on - strandat 523.524 kb on - strandat 523.524 kb on - strandat 523.524 kb on - strandat 523.524 kb on - strandat 523.524 kb on - strandat 523.524 kb on - strandat 523.524 kb on - strandat 523.524 kb on - strandat 523.526 kb on + strandat 523.526 kb on + strandat 523.526 kb on + strandat 523.527 kb on - strandat 523.527 kb on - strandat 523.527 kb on - strandat 523.527 kb on - strandat 523.527 kb on - strandat 523.634 kb on + strandat 523.635 kb on - strandat 523.635 kb on - strandat 523.635 kb on - strandat 523.667 kb on + strandat 523.756 kb on + strandat 523.961 kb on + strandat 523.962 kb on - strandat 523.962 kb on - strandat 524.096 kb on + strand, within GFF1849at 524.096 kb on + strand, within GFF1849at 524.231 kb on + strand, within GFF1849at 524.231 kb on + strand, within GFF1849at 524.232 kb on - strand, within GFF1849at 524.232 kb on - strand, within GFF1849at 524.232 kb on - strand, within GFF1849at 524.232 kb on - strand, within GFF1849at 524.234 kb on + strand, within GFF1849at 524.234 kb on + strand, within GFF1849at 524.234 kb on + strand, within GFF1849at 524.234 kb on + strand, within GFF1849at 524.235 kb on - strand, within GFF1849at 524.235 kb on - strand, within GFF1849at 524.235 kb on - strand, within GFF1849at 524.235 kb on - strand, within GFF1849at 524.235 kb on - strand, within GFF1849at 524.235 kb on - strand, within GFF1849at 524.483 kb on + strand, within GFF1849at 524.483 kb on + strand, within GFF1849at 524.483 kb on + strand, within GFF1849at 524.484 kb on - strand, within GFF1849at 524.484 kb on - strand, within GFF1849at 524.612 kb on + strand, within GFF1849at 524.663 kb on + strandat 524.663 kb on + strandat 524.663 kb on + strandat 524.663 kb on + strandat 524.663 kb on + strandat 524.663 kb on + strandat 524.663 kb on + strandat 524.664 kb on - strandat 524.664 kb on - strandat 524.664 kb on - strandat 524.664 kb on - strandat 524.664 kb on - strandat 524.684 kb on + strandat 524.868 kb on + strand, within GFF1850at 524.868 kb on + strand, within GFF1850at 524.868 kb on + strand, within GFF1850at 524.868 kb on + strand, within GFF1850at 524.868 kb on + strand, within GFF1850at 524.868 kb on + strand, within GFF1850at 524.868 kb on + strand, within GFF1850at 524.868 kb on + strand, within GFF1850at 524.869 kb on - strand, within GFF1850at 524.869 kb on - strand, within GFF1850at 525.210 kb on + strand, within GFF1850at 525.210 kb on + strand, within GFF1850at 525.211 kb on - strand, within GFF1850at 525.211 kb on - strand, within GFF1850at 525.416 kb on + strand, within GFF1850at 525.418 kb on + strand, within GFF1850at 525.418 kb on + strand, within GFF1850at 525.435 kb on + strand, within GFF1850at 525.435 kb on + strand, within GFF1850at 525.435 kb on + strand, within GFF1850at 525.436 kb on - strand, within GFF1850at 525.436 kb on - strand, within GFF1850at 525.436 kb on - strand, within GFF1850at 525.436 kb on - strand, within GFF1850at 525.436 kb on - strand, within GFF1850at 525.436 kb on - strand, within GFF1850at 525.504 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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522,935 + GFF1848 0.76 -0.1
522,935 + GFF1848 0.76 +0.3
522,935 + GFF1848 0.76 -0.8
522,935 + GFF1848 0.76 -0.2
522,935 + GFF1848 0.76 -0.6
522,936 - GFF1848 0.76 +1.7
522,936 - GFF1848 0.76 -0.8
522,936 - GFF1848 0.76 +0.4
522,936 - GFF1848 0.76 -0.6
522,936 - GFF1848 0.76 +0.9
522,936 - GFF1848 0.76 +0.9
522,936 - GFF1848 0.76 -1.1
522,936 - GFF1848 0.76 +1.5
522,936 - GFF1848 0.76 +0.4
522,936 - GFF1848 0.76 -1.6
522,936 - GFF1848 0.76 +0.3
522,936 - GFF1848 0.76 -0.7
522,936 - GFF1848 0.76 +1.0
523,043 + GFF1848 0.79 -0.6
523,043 + GFF1848 0.79 -1.0
523,043 + GFF1848 0.79 -0.5
523,043 + GFF1848 0.79 -0.1
523,043 + GFF1848 0.79 +0.3
523,043 + GFF1848 0.79 -0.1
523,043 + GFF1848 0.79 +0.1
523,043 + GFF1848 0.79 +0.3
523,043 + GFF1848 0.79 +0.2
523,043 + GFF1848 0.79 +0.0
523,043 + GFF1848 0.79 -1.0
523,043 + GFF1848 0.79 -0.2
523,043 + GFF1848 0.79 -0.2
523,044 - GFF1848 0.79 -0.3
523,044 - GFF1848 0.79 -0.5
523,044 - GFF1848 0.79 +0.1
523,044 - GFF1848 0.79 -0.5
523,044 - GFF1848 0.79 -0.1
523,118 + GFF1848 0.81 -0.2
523,119 - GFF1848 0.81 -0.3
523,307 + GFF1848 0.86 -1.9
523,308 - GFF1848 0.86 +0.1
523,523 + -0.5
523,523 + -0.8
523,523 + +0.3
523,523 + -0.3
523,523 + -0.0
523,523 + -0.1
523,523 + -1.3
523,523 + +1.5
523,524 - +0.2
523,524 - +1.5
523,524 - +1.9
523,524 - +0.1
523,524 - -0.6
523,524 - +0.2
523,524 - +0.3
523,524 - -1.3
523,524 - +1.7
523,524 - -0.4
523,524 - +1.7
523,524 - -1.7
523,526 + +0.1
523,526 + +0.3
523,526 + -0.4
523,527 - +0.0
523,527 - +1.1
523,527 - -0.5
523,527 - -0.2
523,527 - -0.3
523,634 + -0.2
523,635 - -0.1
523,635 - +0.5
523,635 - -0.3
523,667 + -0.2
523,756 + -0.4
523,961 + +0.3
523,962 - -0.4
523,962 - -1.5
524,096 + GFF1849 0.23 -0.1
524,096 + GFF1849 0.23 +0.5
524,231 + GFF1849 0.41 -0.1
524,231 + GFF1849 0.41 +0.7
524,232 - GFF1849 0.41 -1.3
524,232 - GFF1849 0.41 +0.2
524,232 - GFF1849 0.41 +1.1
524,232 - GFF1849 0.41 +0.3
524,234 + GFF1849 0.41 -0.0
524,234 + GFF1849 0.41 -0.2
524,234 + GFF1849 0.41 -0.4
524,234 + GFF1849 0.41 +0.3
524,235 - GFF1849 0.41 +0.2
524,235 - GFF1849 0.41 +0.2
524,235 - GFF1849 0.41 -0.6
524,235 - GFF1849 0.41 +0.2
524,235 - GFF1849 0.41 +2.3
524,235 - GFF1849 0.41 -0.7
524,483 + GFF1849 0.72 +1.0
524,483 + GFF1849 0.72 +0.6
524,483 + GFF1849 0.72 +0.4
524,484 - GFF1849 0.72 +0.1
524,484 - GFF1849 0.72 -1.2
524,612 + GFF1849 0.89 +0.7
524,663 + -0.8
524,663 + +0.1
524,663 + +0.5
524,663 + +0.7
524,663 + -0.1
524,663 + -0.0
524,663 + -0.4
524,664 - -0.5
524,664 - -1.5
524,664 - +0.8
524,664 - +0.3
524,664 - +0.3
524,684 + -0.1
524,868 + GFF1850 0.10 -0.3
524,868 + GFF1850 0.10 +0.4
524,868 + GFF1850 0.10 -1.5
524,868 + GFF1850 0.10 +2.7
524,868 + GFF1850 0.10 +0.6
524,868 + GFF1850 0.10 -0.0
524,868 + GFF1850 0.10 +0.8
524,868 + GFF1850 0.10 -0.6
524,869 - GFF1850 0.10 +0.0
524,869 - GFF1850 0.10 -0.3
525,210 + GFF1850 0.55 +0.3
525,210 + GFF1850 0.55 -0.5
525,211 - GFF1850 0.55 +0.2
525,211 - GFF1850 0.55 +0.2
525,416 + GFF1850 0.82 -0.0
525,418 + GFF1850 0.83 -0.7
525,418 + GFF1850 0.83 +0.0
525,435 + GFF1850 0.85 -0.6
525,435 + GFF1850 0.85 -0.0
525,435 + GFF1850 0.85 +0.2
525,436 - GFF1850 0.85 -0.7
525,436 - GFF1850 0.85 +1.3
525,436 - GFF1850 0.85 -0.2
525,436 - GFF1850 0.85 -0.1
525,436 - GFF1850 0.85 +0.4
525,436 - GFF1850 0.85 -0.7
525,504 + -0.1

Or see this region's nucleotide sequence