Strain Fitness in Variovorax sp. SCN45 around GFF1807

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1806 and GFF1807 are separated by 51 nucleotides GFF1806 - Na+/H+-dicarboxylate symporter, at 469,364 to 470,707 GFF1806 GFF1807 - no description, at 470,759 to 470,875 GFF1807 Position (kb) 470 471Strain fitness (log2 ratio) -3 -2 -1 0 1at 469.761 kb on - strand, within GFF1806at 469.761 kb on - strand, within GFF1806at 469.779 kb on + strand, within GFF1806at 469.779 kb on + strand, within GFF1806at 469.779 kb on + strand, within GFF1806at 469.779 kb on + strand, within GFF1806at 469.779 kb on + strand, within GFF1806at 469.779 kb on + strand, within GFF1806at 469.779 kb on + strand, within GFF1806at 469.780 kb on - strand, within GFF1806at 469.780 kb on - strand, within GFF1806at 469.809 kb on + strand, within GFF1806at 469.809 kb on + strand, within GFF1806at 469.938 kb on + strand, within GFF1806at 469.938 kb on + strand, within GFF1806at 469.938 kb on + strand, within GFF1806at 469.938 kb on + strand, within GFF1806at 469.939 kb on - strand, within GFF1806at 469.939 kb on - strand, within GFF1806at 469.939 kb on - strand, within GFF1806at 470.022 kb on + strand, within GFF1806at 470.022 kb on + strand, within GFF1806at 470.022 kb on + strand, within GFF1806at 470.022 kb on + strand, within GFF1806at 470.023 kb on - strand, within GFF1806at 470.070 kb on + strand, within GFF1806at 470.070 kb on + strand, within GFF1806at 470.071 kb on - strand, within GFF1806at 470.071 kb on - strand, within GFF1806at 470.352 kb on + strand, within GFF1806at 470.352 kb on + strand, within GFF1806at 470.352 kb on + strand, within GFF1806at 470.352 kb on + strand, within GFF1806at 470.352 kb on + strand, within GFF1806at 470.353 kb on - strand, within GFF1806at 470.353 kb on - strand, within GFF1806at 470.353 kb on - strand, within GFF1806at 470.353 kb on - strand, within GFF1806at 470.472 kb on + strand, within GFF1806at 470.472 kb on + strand, within GFF1806at 470.473 kb on - strand, within GFF1806at 470.473 kb on - strand, within GFF1806at 470.473 kb on - strand, within GFF1806at 470.473 kb on - strand, within GFF1806at 470.473 kb on - strand, within GFF1806at 470.473 kb on - strand, within GFF1806at 470.473 kb on - strand, within GFF1806at 470.623 kb on - strandat 470.623 kb on - strandat 470.775 kb on + strand, within GFF1807at 470.808 kb on - strand, within GFF1807at 470.873 kb on + strandat 470.873 kb on + strandat 470.873 kb on + strandat 470.873 kb on + strandat 470.874 kb on - strandat 470.874 kb on - strandat 470.874 kb on - strandat 470.874 kb on - strandat 470.874 kb on - strandat 470.874 kb on - strandat 470.874 kb on - strandat 470.898 kb on + strandat 470.898 kb on + strandat 470.898 kb on + strandat 470.898 kb on + strandat 470.898 kb on + strandat 470.898 kb on + strandat 470.898 kb on + strandat 470.898 kb on + strandat 470.899 kb on - strandat 470.899 kb on - strandat 470.899 kb on - strandat 470.899 kb on - strandat 470.899 kb on - strandat 470.899 kb on - strandat 470.972 kb on + strandat 470.972 kb on + strandat 470.972 kb on + strandat 470.972 kb on + strandat 470.972 kb on + strandat 470.973 kb on - strandat 470.973 kb on - strandat 470.988 kb on + strandat 470.988 kb on + strandat 470.989 kb on - strandat 471.105 kb on + strandat 471.105 kb on + strandat 471.106 kb on - strandat 471.107 kb on + strandat 471.107 kb on + strandat 471.108 kb on - strandat 471.108 kb on - strandat 471.149 kb on - strandat 471.149 kb on - strandat 471.157 kb on + strandat 471.157 kb on + strandat 471.158 kb on - strandat 471.158 kb on - strandat 471.158 kb on - strandat 471.158 kb on - strandat 471.158 kb on - strandat 471.158 kb on - strandat 471.163 kb on + strandat 471.164 kb on - strandat 471.164 kb on - strandat 471.267 kb on + strandat 471.267 kb on + strandat 471.319 kb on + strandat 471.319 kb on + strandat 471.319 kb on + strandat 471.319 kb on + strandat 471.319 kb on + strandat 471.319 kb on + strandat 471.319 kb on + strandat 471.319 kb on + strandat 471.319 kb on + strandat 471.319 kb on + strandat 471.319 kb on + strandat 471.319 kb on + strandat 471.319 kb on + strandat 471.319 kb on + strandat 471.319 kb on + strandat 471.320 kb on - strandat 471.320 kb on - strandat 471.320 kb on - strandat 471.320 kb on - strandat 471.320 kb on - strandat 471.320 kb on - strandat 471.320 kb on - strandat 471.320 kb on - strandat 471.320 kb on - strandat 471.320 kb on - strandat 471.320 kb on - strandat 471.320 kb on - strandat 471.320 kb on - strandat 471.320 kb on - strandat 471.320 kb on - strandat 471.435 kb on + strandat 471.435 kb on + strandat 471.436 kb on - strandat 471.436 kb on - strandat 471.436 kb on - strandat 471.495 kb on + strandat 471.495 kb on + strandat 471.495 kb on + strandat 471.495 kb on + strandat 471.496 kb on - strandat 471.739 kb on + strandat 471.739 kb on + strandat 471.740 kb on - strandat 471.772 kb on - strandat 471.772 kb on - strandat 471.810 kb on + strandat 471.810 kb on + strandat 471.810 kb on + strandat 471.810 kb on + strandat 471.810 kb on + strandat 471.810 kb on + strandat 471.811 kb on - strandat 471.811 kb on - strandat 471.811 kb on - strandat 471.811 kb on - strandat 471.811 kb on - strandat 471.811 kb on - strandat 471.811 kb on - strandat 471.827 kb on + strandat 471.828 kb on - strandat 471.828 kb on - strandat 471.828 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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469,761 - GFF1806 0.30 -2.8
469,761 - GFF1806 0.30 +0.0
469,779 + GFF1806 0.31 -0.3
469,779 + GFF1806 0.31 -0.1
469,779 + GFF1806 0.31 -0.7
469,779 + GFF1806 0.31 -0.3
469,779 + GFF1806 0.31 -0.2
469,779 + GFF1806 0.31 +0.1
469,779 + GFF1806 0.31 -0.2
469,780 - GFF1806 0.31 +0.2
469,780 - GFF1806 0.31 -0.1
469,809 + GFF1806 0.33 +0.7
469,809 + GFF1806 0.33 -0.5
469,938 + GFF1806 0.43 -1.2
469,938 + GFF1806 0.43 +0.5
469,938 + GFF1806 0.43 -0.5
469,938 + GFF1806 0.43 -0.5
469,939 - GFF1806 0.43 -0.3
469,939 - GFF1806 0.43 +0.8
469,939 - GFF1806 0.43 -0.3
470,022 + GFF1806 0.49 +0.7
470,022 + GFF1806 0.49 -0.5
470,022 + GFF1806 0.49 -0.8
470,022 + GFF1806 0.49 -0.1
470,023 - GFF1806 0.49 +0.7
470,070 + GFF1806 0.53 -0.8
470,070 + GFF1806 0.53 -0.5
470,071 - GFF1806 0.53 +0.3
470,071 - GFF1806 0.53 -0.7
470,352 + GFF1806 0.74 +1.3
470,352 + GFF1806 0.74 +0.3
470,352 + GFF1806 0.74 +1.1
470,352 + GFF1806 0.74 -0.0
470,352 + GFF1806 0.74 +0.8
470,353 - GFF1806 0.74 +0.2
470,353 - GFF1806 0.74 -0.9
470,353 - GFF1806 0.74 -0.5
470,353 - GFF1806 0.74 +0.9
470,472 + GFF1806 0.82 +0.6
470,472 + GFF1806 0.82 -0.7
470,473 - GFF1806 0.83 -0.4
470,473 - GFF1806 0.83 +0.8
470,473 - GFF1806 0.83 +0.3
470,473 - GFF1806 0.83 +0.3
470,473 - GFF1806 0.83 +0.6
470,473 - GFF1806 0.83 -0.2
470,473 - GFF1806 0.83 -0.7
470,623 - +0.9
470,623 - -0.7
470,775 + GFF1807 0.14 +0.7
470,808 - GFF1807 0.42 -0.1
470,873 + +0.5
470,873 + -0.4
470,873 + -1.2
470,873 + +0.4
470,874 - -0.1
470,874 - +0.2
470,874 - +0.2
470,874 - -0.7
470,874 - +1.1
470,874 - -0.7
470,874 - -0.3
470,898 + +0.2
470,898 + -0.3
470,898 + +0.1
470,898 + +0.9
470,898 + -0.5
470,898 + -0.3
470,898 + -1.1
470,898 + -0.5
470,899 - +0.9
470,899 - +0.2
470,899 - -0.4
470,899 - -1.3
470,899 - -2.6
470,899 - +0.1
470,972 + -0.1
470,972 + -0.2
470,972 + -0.6
470,972 + +0.7
470,972 + -2.1
470,973 - -0.1
470,973 - +1.3
470,988 + -0.0
470,988 + -0.1
470,989 - -0.4
471,105 + -0.5
471,105 + +0.7
471,106 - -1.0
471,107 + +0.0
471,107 + +0.5
471,108 - -0.2
471,108 - -0.1
471,149 - -0.1
471,149 - +0.4
471,157 + +0.3
471,157 + +0.0
471,158 - -0.1
471,158 - -0.5
471,158 - +0.7
471,158 - +0.4
471,158 - +0.2
471,158 - -0.4
471,163 + -0.7
471,164 - -0.6
471,164 - -0.7
471,267 + -1.7
471,267 + -0.9
471,319 + +0.2
471,319 + +0.7
471,319 + +0.0
471,319 + +0.3
471,319 + -0.5
471,319 + +0.7
471,319 + -0.1
471,319 + +0.3
471,319 + -0.3
471,319 + -0.8
471,319 + +0.0
471,319 + -0.9
471,319 + +0.4
471,319 + -0.9
471,319 + -0.7
471,320 - -0.0
471,320 - +0.2
471,320 - +0.3
471,320 - -0.4
471,320 - -0.5
471,320 - +0.1
471,320 - -0.5
471,320 - -0.5
471,320 - +0.4
471,320 - -0.1
471,320 - -0.2
471,320 - +0.5
471,320 - -0.4
471,320 - -0.2
471,320 - -1.0
471,435 + -0.9
471,435 + -0.3
471,436 - +0.4
471,436 - -0.3
471,436 - +0.6
471,495 + -0.9
471,495 + +0.0
471,495 + -0.3
471,495 + -0.1
471,496 - -0.0
471,739 + -0.6
471,739 + -0.1
471,740 - -1.5
471,772 - +0.2
471,772 - +0.8
471,810 + -0.7
471,810 + -0.3
471,810 + -0.5
471,810 + -0.3
471,810 + -0.2
471,810 + +0.1
471,811 - -0.0
471,811 - -3.1
471,811 - +0.1
471,811 - +0.5
471,811 - -0.0
471,811 - +0.3
471,811 - -1.5
471,827 + -0.7
471,828 - -0.0
471,828 - -1.1
471,828 - -0.3

Or see this region's nucleotide sequence