Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1722 and GFF1723 overlap by 4 nucleotides GFF1723 and GFF1724 are separated by 12 nucleotides GFF1724 and GFF1725 overlap by 11 nucleotides
GFF1722 - hypothetical protein, at 372,066 to 372,764
GFF1722
GFF1723 - Extracytoplasmic function (ECF) sigma factor VreI, at 372,761 to 373,264
GFF1723
GFF1724 - no description, at 373,277 to 373,408
GFF1724
GFF1725 - Sigma factor regulator VreR (cytoplasmic membrane-localized) of trans-envelope signaling system, at 373,398 to 374,408
GFF1725
Position (kb) 373
374 Strain fitness (log2 ratio) -2
-1
0
1 at 372.321 kb on + strand, within GFF1722 at 372.321 kb on + strand, within GFF1722 at 372.321 kb on + strand, within GFF1722 at 372.322 kb on - strand, within GFF1722 at 372.322 kb on - strand, within GFF1722 at 372.323 kb on + strand, within GFF1722 at 372.323 kb on + strand, within GFF1722 at 372.323 kb on + strand, within GFF1722 at 372.324 kb on - strand, within GFF1722 at 372.324 kb on - strand, within GFF1722 at 372.324 kb on - strand, within GFF1722 at 372.378 kb on + strand, within GFF1722 at 372.378 kb on + strand, within GFF1722 at 372.378 kb on + strand, within GFF1722 at 372.378 kb on + strand, within GFF1722 at 372.378 kb on + strand, within GFF1722 at 372.378 kb on + strand, within GFF1722 at 372.378 kb on + strand, within GFF1722 at 372.379 kb on - strand, within GFF1722 at 372.379 kb on - strand, within GFF1722 at 372.379 kb on - strand, within GFF1722 at 372.379 kb on - strand, within GFF1722 at 372.379 kb on - strand, within GFF1722 at 372.379 kb on - strand, within GFF1722 at 372.379 kb on - strand, within GFF1722 at 372.379 kb on - strand, within GFF1722 at 372.379 kb on - strand, within GFF1722 at 372.379 kb on - strand, within GFF1722 at 372.379 kb on - strand, within GFF1722 at 372.495 kb on + strand, within GFF1722 at 372.495 kb on + strand, within GFF1722 at 372.496 kb on - strand, within GFF1722 at 372.809 kb on + strand at 372.810 kb on - strand at 372.810 kb on - strand at 373.406 kb on + strand at 373.406 kb on + strand at 373.406 kb on + strand at 373.407 kb on - strand at 373.407 kb on - strand at 373.407 kb on - strand at 373.407 kb on - strand at 373.407 kb on - strand at 373.638 kb on + strand, within GFF1725 at 373.638 kb on + strand, within GFF1725 at 373.994 kb on + strand, within GFF1725 at 373.994 kb on + strand, within GFF1725 at 373.994 kb on + strand, within GFF1725 at 373.995 kb on - strand, within GFF1725 at 374.119 kb on - strand, within GFF1725 at 374.127 kb on + strand, within GFF1725 at 374.127 kb on + strand, within GFF1725 at 374.127 kb on + strand, within GFF1725 at 374.128 kb on - strand, within GFF1725 at 374.361 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 372,321 + GFF1722 0.36 +0.7 372,321 + GFF1722 0.36 -1.8 372,321 + GFF1722 0.36 +0.5 372,322 - GFF1722 0.37 -0.3 372,322 - GFF1722 0.37 +0.2 372,323 + GFF1722 0.37 +0.6 372,323 + GFF1722 0.37 -0.9 372,323 + GFF1722 0.37 -0.4 372,324 - GFF1722 0.37 +0.9 372,324 - GFF1722 0.37 -1.0 372,324 - GFF1722 0.37 +0.4 372,378 + GFF1722 0.45 -0.1 372,378 + GFF1722 0.45 +0.1 372,378 + GFF1722 0.45 +0.7 372,378 + GFF1722 0.45 +1.7 372,378 + GFF1722 0.45 -0.2 372,378 + GFF1722 0.45 -0.9 372,378 + GFF1722 0.45 -0.3 372,379 - GFF1722 0.45 +0.0 372,379 - GFF1722 0.45 -0.3 372,379 - GFF1722 0.45 +0.8 372,379 - GFF1722 0.45 -0.1 372,379 - GFF1722 0.45 +0.5 372,379 - GFF1722 0.45 +1.7 372,379 - GFF1722 0.45 +0.3 372,379 - GFF1722 0.45 +1.0 372,379 - GFF1722 0.45 -0.9 372,379 - GFF1722 0.45 +0.4 372,379 - GFF1722 0.45 -0.7 372,495 + GFF1722 0.61 +0.9 372,495 + GFF1722 0.61 +0.0 372,496 - GFF1722 0.62 -0.4 372,809 + -0.4 372,810 - +0.3 372,810 - -0.4 373,406 + +0.5 373,406 + -0.5 373,406 + +0.3 373,407 - -0.1 373,407 - +0.5 373,407 - +1.3 373,407 - -0.4 373,407 - -0.9 373,638 + GFF1725 0.24 -0.3 373,638 + GFF1725 0.24 +0.1 373,994 + GFF1725 0.59 +0.8 373,994 + GFF1725 0.59 +0.5 373,994 + GFF1725 0.59 -0.9 373,995 - GFF1725 0.59 -1.1 374,119 - GFF1725 0.71 -1.1 374,127 + GFF1725 0.72 +0.3 374,127 + GFF1725 0.72 +0.9 374,127 + GFF1725 0.72 +0.7 374,128 - GFF1725 0.72 -0.5 374,361 + -0.8
Or see this region's nucleotide sequence