Strain Fitness in Variovorax sp. SCN45 around GFF1518

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
112,540	+		GFF1516	0.78	-0.3
112,540	+		GFF1516	0.78	-0.3
112,540	+		GFF1516	0.78	-1.3
112,998	+		GFF1517	0.32	+1.1
112,999	-		GFF1517	0.32	-0.1
113,094	+		GFF1517	0.49	-0.1
113,094	+		GFF1517	0.49	-1.6
113,094	+		GFF1517	0.49	-0.5
113,280	+		GFF1517	0.82	+0.1
113,486	+		GFF1518	0.12	-0.5
113,487	-		GFF1518	0.12	-1.2
113,814	-		GFF1518	0.81	-0.8
113,814	-		GFF1518	0.81	-0.1
113,817	+		GFF1518	0.82	+0.0
113,817	+		GFF1518	0.82	+0.7
113,817	+		GFF1518	0.82	+0.7
113,818	-		GFF1518	0.82	+0.1
113,818	-		GFF1518	0.82	-0.7
113,818	-		GFF1518	0.82	-1.1
113,818	-		GFF1518	0.82	-0.0
113,818	-		GFF1518	0.82	-0.1
113,818	-		GFF1518	0.82	+0.8
113,818	-		GFF1518	0.82	-1.5
113,956	+				+0.1
114,103	+		GFF1519	0.20	-0.9
114,103	+		GFF1519	0.20	-0.3
114,202	+		GFF1519	0.30	-0.1
114,203	-		GFF1519	0.30	+0.1
114,203	-		GFF1519	0.30	-0.2
114,203	-		GFF1519	0.30	-0.1
114,313	+		GFF1519	0.41	-0.7
114,313	+		GFF1519	0.41	+0.3
114,313	+		GFF1519	0.41	-0.0
114,476	-		GFF1519	0.58	+0.3
114,709	+		GFF1519	0.81	-0.2
114,709	+		GFF1519	0.81	-0.3
114,710	-		GFF1519	0.81	-0.3
114,884	+				+0.4
114,884	+				-1.1
114,885	-				+0.8