Strain Fitness in Variovorax sp. SCN45 around GFF1495

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
87,203	-				+1.3
87,379	+		GFF1494	0.22	-1.3
87,397	+		GFF1494	0.24	-0.5
87,397	+		GFF1494	0.24	-0.7
87,671	-		GFF1494	0.52	-0.9
87,671	-		GFF1494	0.52	+1.4
87,671	-		GFF1494	0.52	-0.3
87,671	-		GFF1494	0.52	-1.8
87,826	+		GFF1494	0.68	+0.3
87,827	-		GFF1494	0.68	-0.7
87,874	+		GFF1494	0.73	-0.1
87,874	+		GFF1494	0.73	-0.6
87,874	+		GFF1494	0.73	+0.5
87,874	+		GFF1494	0.73	+0.1
87,875	-		GFF1494	0.73	+0.2
88,266	+				-0.1
88,266	+				+0.3
88,267	-				-0.1
88,267	-				+0.8
88,267	-				+0.1
88,267	-				-0.4
88,267	-				-0.5
88,267	-				-0.1
89,046	+				-0.4
89,046	+				-0.3
89,047	-				-0.2
89,047	-				-0.4
89,047	-				+0.2
89,047	-				-0.3
89,051	+				-0.4
89,051	+				-0.3
89,051	+				+1.2
89,051	+				+0.2
89,051	+				+0.5
89,051	+				-0.1
89,051	+				-0.8
89,051	+				-0.2
89,051	+				+0.3
89,051	+				+0.2
89,051	+				-0.5
89,052	-				+0.7
89,052	-				+0.3
89,052	-				+1.2
89,052	-				-0.4
89,052	-				-0.5
89,052	-				+0.5
89,052	-				-0.4
89,052	-				+0.4
89,052	-				-0.3
89,052	-				+0.4
89,052	-				+0.7
90,055	+		GFF1497	0.21	-0.2
90,115	-		GFF1497	0.27	+0.1