Strain Fitness in Variovorax sp. SCN45 around GFF1437

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1436 and GFF1437 are separated by 163 nucleotidesGFF1437 and GFF1438 are separated by 81 nucleotidesGFF1438 and GFF1439 are separated by 277 nucleotides GFF1436 - CaiB/BaiF family protein, at 26,633 to 27,841 GFF1436 GFF1437 - Transcriptional regulator, LysR family, at 28,005 to 28,901 GFF1437 GFF1438 - no description, at 28,983 to 29,237 GFF1438 GFF1439 - putative inositol monophosphatase, at 29,515 to 30,348 GFF1439 Position (kb) 28 29Strain fitness (log2 ratio) -2 -1 0 1 2at 27.123 kb on + strand, within GFF1436at 27.195 kb on + strand, within GFF1436at 27.195 kb on + strand, within GFF1436at 27.195 kb on + strand, within GFF1436at 27.196 kb on - strand, within GFF1436at 27.198 kb on + strand, within GFF1436at 27.198 kb on + strand, within GFF1436at 27.199 kb on - strand, within GFF1436at 27.225 kb on + strand, within GFF1436at 27.225 kb on + strand, within GFF1436at 27.226 kb on - strand, within GFF1436at 27.273 kb on + strand, within GFF1436at 27.273 kb on + strand, within GFF1436at 27.274 kb on - strand, within GFF1436at 27.303 kb on + strand, within GFF1436at 27.303 kb on + strand, within GFF1436at 27.304 kb on - strand, within GFF1436at 27.304 kb on - strand, within GFF1436at 27.304 kb on - strand, within GFF1436at 27.304 kb on - strand, within GFF1436at 27.304 kb on - strand, within GFF1436at 27.411 kb on + strand, within GFF1436at 27.412 kb on - strand, within GFF1436at 27.412 kb on - strand, within GFF1436at 27.465 kb on + strand, within GFF1436at 27.465 kb on + strand, within GFF1436at 27.465 kb on + strand, within GFF1436at 27.465 kb on + strand, within GFF1436at 27.465 kb on + strand, within GFF1436at 27.502 kb on - strand, within GFF1436at 27.651 kb on + strand, within GFF1436at 27.651 kb on + strand, within GFF1436at 27.651 kb on + strand, within GFF1436at 27.652 kb on - strand, within GFF1436at 27.652 kb on - strand, within GFF1436at 27.652 kb on - strand, within GFF1436at 27.658 kb on + strand, within GFF1436at 27.658 kb on + strand, within GFF1436at 27.658 kb on + strand, within GFF1436at 27.658 kb on + strand, within GFF1436at 27.658 kb on + strand, within GFF1436at 27.659 kb on - strand, within GFF1436at 27.659 kb on - strand, within GFF1436at 27.659 kb on - strand, within GFF1436at 27.729 kb on - strandat 27.955 kb on - strandat 28.012 kb on + strandat 28.012 kb on + strandat 28.012 kb on + strandat 28.012 kb on + strandat 28.204 kb on - strand, within GFF1437at 28.204 kb on - strand, within GFF1437at 28.223 kb on - strand, within GFF1437at 28.494 kb on + strand, within GFF1437at 28.494 kb on + strand, within GFF1437at 28.495 kb on - strand, within GFF1437at 28.495 kb on - strand, within GFF1437at 28.495 kb on - strand, within GFF1437at 28.495 kb on - strand, within GFF1437at 28.731 kb on + strand, within GFF1437at 28.731 kb on + strand, within GFF1437at 28.731 kb on + strand, within GFF1437at 28.731 kb on + strand, within GFF1437at 28.731 kb on + strand, within GFF1437at 28.731 kb on + strand, within GFF1437at 28.731 kb on + strand, within GFF1437at 28.731 kb on + strand, within GFF1437at 28.731 kb on + strand, within GFF1437at 28.732 kb on - strand, within GFF1437at 28.732 kb on - strand, within GFF1437at 28.732 kb on - strand, within GFF1437at 28.827 kb on + strandat 28.827 kb on + strandat 28.827 kb on + strandat 28.828 kb on - strandat 28.828 kb on - strandat 28.828 kb on - strandat 28.828 kb on - strandat 28.828 kb on - strandat 28.828 kb on - strandat 28.828 kb on - strandat 28.828 kb on - strandat 28.829 kb on + strandat 28.829 kb on + strandat 28.829 kb on + strandat 28.829 kb on + strandat 28.830 kb on - strandat 28.830 kb on - strandat 28.830 kb on - strandat 28.842 kb on + strandat 28.842 kb on + strandat 28.843 kb on - strandat 28.900 kb on - strandat 29.056 kb on + strand, within GFF1438at 29.056 kb on + strand, within GFF1438at 29.056 kb on + strand, within GFF1438at 29.056 kb on + strand, within GFF1438at 29.056 kb on + strand, within GFF1438at 29.057 kb on - strand, within GFF1438at 29.057 kb on - strand, within GFF1438at 29.057 kb on - strand, within GFF1438at 29.057 kb on - strand, within GFF1438at 29.074 kb on + strand, within GFF1438at 29.075 kb on - strand, within GFF1438at 29.163 kb on - strand, within GFF1438at 29.185 kb on + strand, within GFF1438at 29.185 kb on + strand, within GFF1438at 29.185 kb on + strand, within GFF1438at 29.185 kb on + strand, within GFF1438at 29.185 kb on + strand, within GFF1438at 29.185 kb on + strand, within GFF1438at 29.185 kb on + strand, within GFF1438at 29.185 kb on + strand, within GFF1438at 29.186 kb on - strand, within GFF1438at 29.186 kb on - strand, within GFF1438at 29.224 kb on - strandat 29.363 kb on + strandat 29.363 kb on + strandat 29.363 kb on + strandat 29.363 kb on + strandat 29.364 kb on - strandat 29.364 kb on - strandat 29.364 kb on - strandat 29.364 kb on - strandat 29.364 kb on - strandat 29.549 kb on + strandat 29.550 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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27,123 + GFF1436 0.41 -0.1
27,195 + GFF1436 0.46 -0.8
27,195 + GFF1436 0.46 +1.1
27,195 + GFF1436 0.46 -0.3
27,196 - GFF1436 0.47 -0.9
27,198 + GFF1436 0.47 +0.7
27,198 + GFF1436 0.47 -0.2
27,199 - GFF1436 0.47 +0.0
27,225 + GFF1436 0.49 -1.2
27,225 + GFF1436 0.49 -0.1
27,226 - GFF1436 0.49 +0.8
27,273 + GFF1436 0.53 +0.5
27,273 + GFF1436 0.53 -2.2
27,274 - GFF1436 0.53 +0.4
27,303 + GFF1436 0.55 +0.1
27,303 + GFF1436 0.55 -0.5
27,304 - GFF1436 0.56 -0.7
27,304 - GFF1436 0.56 -0.3
27,304 - GFF1436 0.56 +0.4
27,304 - GFF1436 0.56 -0.1
27,304 - GFF1436 0.56 +1.7
27,411 + GFF1436 0.64 +0.2
27,412 - GFF1436 0.64 +0.9
27,412 - GFF1436 0.64 +0.2
27,465 + GFF1436 0.69 +0.9
27,465 + GFF1436 0.69 +0.1
27,465 + GFF1436 0.69 -0.2
27,465 + GFF1436 0.69 -0.5
27,465 + GFF1436 0.69 +0.1
27,502 - GFF1436 0.72 +1.7
27,651 + GFF1436 0.84 -0.7
27,651 + GFF1436 0.84 -0.4
27,651 + GFF1436 0.84 +0.2
27,652 - GFF1436 0.84 +1.1
27,652 - GFF1436 0.84 +2.1
27,652 - GFF1436 0.84 +1.3
27,658 + GFF1436 0.85 +0.5
27,658 + GFF1436 0.85 -0.4
27,658 + GFF1436 0.85 +0.8
27,658 + GFF1436 0.85 -1.3
27,658 + GFF1436 0.85 +0.3
27,659 - GFF1436 0.85 +0.1
27,659 - GFF1436 0.85 +0.1
27,659 - GFF1436 0.85 -0.1
27,729 - +0.9
27,955 - -0.0
28,012 + +0.7
28,012 + -0.3
28,012 + -0.3
28,012 + +0.4
28,204 - GFF1437 0.22 -0.5
28,204 - GFF1437 0.22 -0.6
28,223 - GFF1437 0.24 +0.7
28,494 + GFF1437 0.55 +1.0
28,494 + GFF1437 0.55 -0.4
28,495 - GFF1437 0.55 +0.1
28,495 - GFF1437 0.55 -0.1
28,495 - GFF1437 0.55 +0.1
28,495 - GFF1437 0.55 -0.0
28,731 + GFF1437 0.81 -1.2
28,731 + GFF1437 0.81 -0.5
28,731 + GFF1437 0.81 -1.9
28,731 + GFF1437 0.81 +0.2
28,731 + GFF1437 0.81 +0.6
28,731 + GFF1437 0.81 +1.3
28,731 + GFF1437 0.81 -1.8
28,731 + GFF1437 0.81 +0.6
28,731 + GFF1437 0.81 -0.7
28,732 - GFF1437 0.81 +0.3
28,732 - GFF1437 0.81 -0.3
28,732 - GFF1437 0.81 +0.6
28,827 + +1.7
28,827 + -0.5
28,827 + +0.4
28,828 - +1.1
28,828 - -0.2
28,828 - +0.7
28,828 - -0.0
28,828 - +1.0
28,828 - -0.9
28,828 - +0.1
28,828 - +0.3
28,829 + -1.2
28,829 + +0.7
28,829 + +0.2
28,829 + -0.4
28,830 - -0.9
28,830 - -0.4
28,830 - +0.7
28,842 + +0.1
28,842 + +0.7
28,843 - -0.6
28,900 - -0.3
29,056 + GFF1438 0.29 -0.3
29,056 + GFF1438 0.29 +0.1
29,056 + GFF1438 0.29 -0.7
29,056 + GFF1438 0.29 -1.9
29,056 + GFF1438 0.29 +0.1
29,057 - GFF1438 0.29 -1.1
29,057 - GFF1438 0.29 +0.3
29,057 - GFF1438 0.29 -0.7
29,057 - GFF1438 0.29 -1.2
29,074 + GFF1438 0.36 -0.2
29,075 - GFF1438 0.36 -1.2
29,163 - GFF1438 0.71 +0.4
29,185 + GFF1438 0.79 +0.3
29,185 + GFF1438 0.79 -0.4
29,185 + GFF1438 0.79 +0.2
29,185 + GFF1438 0.79 -0.3
29,185 + GFF1438 0.79 +1.0
29,185 + GFF1438 0.79 +1.1
29,185 + GFF1438 0.79 -0.5
29,185 + GFF1438 0.79 +1.7
29,186 - GFF1438 0.80 -0.9
29,186 - GFF1438 0.80 +1.4
29,224 - -0.8
29,363 + +0.4
29,363 + +0.7
29,363 + +0.7
29,363 + -0.0
29,364 - +0.3
29,364 - +1.7
29,364 - +1.7
29,364 - -0.3
29,364 - -0.3
29,549 + -0.3
29,550 - +0.8

Or see this region's nucleotide sequence