Strain Fitness in Variovorax sp. SCN45 around GFF1431

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
21,178	+		GFF1430	0.71	-1.0
21,179	-		GFF1430	0.71	-0.7
21,336	+		GFF1430	0.78	+0.9
21,336	+		GFF1430	0.78	+0.1
21,337	-		GFF1430	0.78	+0.5
21,444	-		GFF1430	0.83	+0.6
21,772	+				-0.7
21,860	+				-1.3
21,861	-				+0.2
21,861	-				-0.3
21,861	-				-0.4
21,867	-				-0.3
21,867	-				+0.3
22,062	-		GFF1431	0.22	-0.2
22,064	+		GFF1431	0.22	+0.3
22,106	+		GFF1431	0.30	+1.7
22,106	+		GFF1431	0.30	+0.1
22,106	+		GFF1431	0.30	+0.2
22,452	+				+0.7
22,651	+		GFF1432	0.19	+0.1
23,215	+		GFF1432	0.89	-0.4
23,216	-		GFF1432	0.89	+1.0
23,216	-		GFF1432	0.89	+0.2
23,440	-				+0.1