Strain Fitness in Variovorax sp. SCN45 around GFF1299

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1298 and GFF1299 are separated by 22 nucleotidesGFF1299 and GFF1300 are separated by 113 nucleotidesGFF1300 and GFF1301 are separated by 49 nucleotides GFF1298 - Cell division protein, at 628,732 to 629,835 GFF1298 GFF1299 - DNA ligase (NAD(+)) (EC 6.5.1.2), at 629,858 to 631,942 GFF1299 GFF1300 - hypothetical protein, at 632,056 to 632,472 GFF1300 GFF1301 - Peptide deformylase (EC 3.5.1.88), at 632,522 to 633,061 GFF1301 Position (kb) 629 630 631 632Strain fitness (log2 ratio) -2 -1 0 1 2at 629.052 kb on + strand, within GFF1298at 629.194 kb on + strand, within GFF1298at 629.194 kb on + strand, within GFF1298at 629.194 kb on + strand, within GFF1298at 629.194 kb on + strand, within GFF1298at 629.194 kb on + strand, within GFF1298at 629.194 kb on + strand, within GFF1298at 629.195 kb on - strand, within GFF1298at 629.257 kb on + strand, within GFF1298at 629.257 kb on + strand, within GFF1298at 629.434 kb on + strand, within GFF1298at 629.434 kb on + strand, within GFF1298at 629.770 kb on + strandat 629.770 kb on + strandat 629.770 kb on + strandat 629.833 kb on + strandat 629.833 kb on + strandat 629.833 kb on + strandat 629.834 kb on - strandat 629.834 kb on - strandat 631.940 kb on + strandat 631.941 kb on - strandat 632.007 kb on + strandat 632.007 kb on + strandat 632.007 kb on + strandat 632.007 kb on + strandat 632.007 kb on + strandat 632.007 kb on + strandat 632.008 kb on - strandat 632.008 kb on - strandat 632.008 kb on - strandat 632.008 kb on - strandat 632.008 kb on - strandat 632.008 kb on - strandat 632.008 kb on - strandat 632.008 kb on - strandat 632.008 kb on - strandat 632.008 kb on - strandat 632.143 kb on + strand, within GFF1300at 632.143 kb on + strand, within GFF1300at 632.143 kb on + strand, within GFF1300at 632.143 kb on + strand, within GFF1300at 632.143 kb on + strand, within GFF1300at 632.143 kb on + strand, within GFF1300at 632.143 kb on + strand, within GFF1300at 632.143 kb on + strand, within GFF1300at 632.143 kb on + strand, within GFF1300at 632.143 kb on + strand, within GFF1300at 632.143 kb on + strand, within GFF1300at 632.144 kb on - strand, within GFF1300at 632.144 kb on - strand, within GFF1300at 632.158 kb on + strand, within GFF1300at 632.158 kb on + strand, within GFF1300at 632.158 kb on + strand, within GFF1300at 632.173 kb on + strand, within GFF1300at 632.173 kb on + strand, within GFF1300at 632.173 kb on + strand, within GFF1300at 632.173 kb on + strand, within GFF1300at 632.174 kb on - strand, within GFF1300at 632.174 kb on - strand, within GFF1300at 632.176 kb on + strand, within GFF1300at 632.176 kb on + strand, within GFF1300at 632.176 kb on + strand, within GFF1300at 632.176 kb on + strand, within GFF1300at 632.176 kb on + strand, within GFF1300at 632.176 kb on + strand, within GFF1300at 632.176 kb on + strand, within GFF1300at 632.176 kb on + strand, within GFF1300at 632.176 kb on + strand, within GFF1300at 632.176 kb on + strand, within GFF1300at 632.176 kb on + strand, within GFF1300at 632.176 kb on + strand, within GFF1300at 632.177 kb on - strand, within GFF1300at 632.177 kb on - strand, within GFF1300at 632.177 kb on - strand, within GFF1300at 632.177 kb on - strand, within GFF1300at 632.177 kb on - strand, within GFF1300at 632.177 kb on - strand, within GFF1300at 632.177 kb on - strand, within GFF1300at 632.177 kb on - strand, within GFF1300at 632.218 kb on + strand, within GFF1300at 632.219 kb on - strand, within GFF1300at 632.219 kb on - strand, within GFF1300at 632.219 kb on - strand, within GFF1300at 632.219 kb on - strand, within GFF1300at 632.219 kb on - strand, within GFF1300at 632.219 kb on - strand, within GFF1300at 632.219 kb on - strand, within GFF1300at 632.236 kb on + strand, within GFF1300at 632.236 kb on + strand, within GFF1300at 632.236 kb on + strand, within GFF1300at 632.236 kb on + strand, within GFF1300at 632.236 kb on + strand, within GFF1300at 632.236 kb on + strand, within GFF1300at 632.236 kb on + strand, within GFF1300at 632.237 kb on - strand, within GFF1300at 632.237 kb on - strand, within GFF1300at 632.237 kb on - strand, within GFF1300at 632.239 kb on + strand, within GFF1300at 632.239 kb on + strand, within GFF1300at 632.239 kb on + strand, within GFF1300at 632.239 kb on + strand, within GFF1300at 632.239 kb on + strand, within GFF1300at 632.239 kb on + strand, within GFF1300at 632.239 kb on + strand, within GFF1300at 632.240 kb on - strand, within GFF1300at 632.240 kb on - strand, within GFF1300at 632.240 kb on - strand, within GFF1300at 632.240 kb on - strand, within GFF1300at 632.240 kb on - strand, within GFF1300at 632.240 kb on - strand, within GFF1300at 632.240 kb on - strand, within GFF1300at 632.240 kb on - strand, within GFF1300at 632.240 kb on - strand, within GFF1300at 632.257 kb on + strand, within GFF1300at 632.257 kb on + strand, within GFF1300at 632.257 kb on - strand, within GFF1300at 632.258 kb on - strand, within GFF1300at 632.258 kb on - strand, within GFF1300at 632.258 kb on - strand, within GFF1300at 632.258 kb on - strand, within GFF1300at 632.260 kb on + strand, within GFF1300at 632.260 kb on + strand, within GFF1300at 632.260 kb on + strand, within GFF1300at 632.261 kb on - strand, within GFF1300at 632.275 kb on + strand, within GFF1300at 632.276 kb on - strand, within GFF1300at 632.276 kb on - strand, within GFF1300at 632.278 kb on + strand, within GFF1300at 632.278 kb on + strand, within GFF1300at 632.278 kb on + strand, within GFF1300at 632.278 kb on + strand, within GFF1300at 632.279 kb on - strand, within GFF1300at 632.279 kb on - strand, within GFF1300at 632.279 kb on - strand, within GFF1300at 632.279 kb on - strand, within GFF1300at 632.279 kb on - strand, within GFF1300at 632.279 kb on - strand, within GFF1300at 632.293 kb on + strand, within GFF1300at 632.457 kb on + strandat 632.457 kb on + strandat 632.457 kb on + strandat 632.457 kb on + strandat 632.457 kb on + strandat 632.457 kb on + strandat 632.458 kb on - strandat 632.458 kb on - strandat 632.512 kb on + strandat 632.679 kb on + strand, within GFF1301at 632.679 kb on + strand, within GFF1301at 632.680 kb on - strand, within GFF1301at 632.680 kb on - strand, within GFF1301at 632.680 kb on - strand, within GFF1301at 632.680 kb on - strand, within GFF1301at 632.876 kb on + strand, within GFF1301at 632.877 kb on - strand, within GFF1301at 632.877 kb on - strand, within GFF1301at 632.877 kb on - strand, within GFF1301at 632.879 kb on - strand, within GFF1301at 632.894 kb on + strand, within GFF1301at 632.894 kb on + strand, within GFF1301

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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629,052 + GFF1298 0.29 -1.3
629,194 + GFF1298 0.42 -1.3
629,194 + GFF1298 0.42 -0.2
629,194 + GFF1298 0.42 -0.8
629,194 + GFF1298 0.42 +0.7
629,194 + GFF1298 0.42 -0.8
629,194 + GFF1298 0.42 +0.6
629,195 - GFF1298 0.42 +1.1
629,257 + GFF1298 0.48 -0.6
629,257 + GFF1298 0.48 -0.2
629,434 + GFF1298 0.64 -0.9
629,434 + GFF1298 0.64 -0.9
629,770 + +0.2
629,770 + -0.4
629,770 + -0.0
629,833 + +0.1
629,833 + -0.2
629,833 + -0.1
629,834 - -1.2
629,834 - +0.5
631,940 + -1.1
631,941 - -2.4
632,007 + +0.3
632,007 + +1.0
632,007 + -0.7
632,007 + -0.8
632,007 + -0.8
632,007 + +0.4
632,008 - -0.1
632,008 - -0.4
632,008 - +0.1
632,008 - -0.1
632,008 - -0.1
632,008 - +2.6
632,008 - -0.2
632,008 - -1.4
632,008 - -0.5
632,008 - -0.0
632,143 + GFF1300 0.21 -0.3
632,143 + GFF1300 0.21 +1.0
632,143 + GFF1300 0.21 +0.5
632,143 + GFF1300 0.21 -0.2
632,143 + GFF1300 0.21 +0.2
632,143 + GFF1300 0.21 +0.8
632,143 + GFF1300 0.21 -0.2
632,143 + GFF1300 0.21 -0.4
632,143 + GFF1300 0.21 +0.3
632,143 + GFF1300 0.21 +0.7
632,143 + GFF1300 0.21 -0.2
632,144 - GFF1300 0.21 -0.4
632,144 - GFF1300 0.21 -0.5
632,158 + GFF1300 0.24 -0.6
632,158 + GFF1300 0.24 +0.5
632,158 + GFF1300 0.24 -0.1
632,173 + GFF1300 0.28 +0.2
632,173 + GFF1300 0.28 -0.0
632,173 + GFF1300 0.28 +0.1
632,173 + GFF1300 0.28 -0.1
632,174 - GFF1300 0.28 -0.6
632,174 - GFF1300 0.28 +0.4
632,176 + GFF1300 0.29 -0.3
632,176 + GFF1300 0.29 -0.6
632,176 + GFF1300 0.29 -0.2
632,176 + GFF1300 0.29 +0.2
632,176 + GFF1300 0.29 +0.0
632,176 + GFF1300 0.29 -0.3
632,176 + GFF1300 0.29 -0.7
632,176 + GFF1300 0.29 +0.5
632,176 + GFF1300 0.29 -0.1
632,176 + GFF1300 0.29 +0.1
632,176 + GFF1300 0.29 +0.7
632,176 + GFF1300 0.29 -0.2
632,177 - GFF1300 0.29 -0.1
632,177 - GFF1300 0.29 +1.0
632,177 - GFF1300 0.29 +1.7
632,177 - GFF1300 0.29 +0.4
632,177 - GFF1300 0.29 +0.9
632,177 - GFF1300 0.29 -0.0
632,177 - GFF1300 0.29 -1.1
632,177 - GFF1300 0.29 -0.4
632,218 + GFF1300 0.39 -0.2
632,219 - GFF1300 0.39 +0.1
632,219 - GFF1300 0.39 -0.4
632,219 - GFF1300 0.39 -0.9
632,219 - GFF1300 0.39 -0.5
632,219 - GFF1300 0.39 -0.6
632,219 - GFF1300 0.39 -0.8
632,219 - GFF1300 0.39 -0.0
632,236 + GFF1300 0.43 +0.3
632,236 + GFF1300 0.43 -0.4
632,236 + GFF1300 0.43 -0.7
632,236 + GFF1300 0.43 +0.1
632,236 + GFF1300 0.43 -0.2
632,236 + GFF1300 0.43 +0.3
632,236 + GFF1300 0.43 -0.7
632,237 - GFF1300 0.43 +0.1
632,237 - GFF1300 0.43 +0.9
632,237 - GFF1300 0.43 -0.7
632,239 + GFF1300 0.44 +1.1
632,239 + GFF1300 0.44 +1.1
632,239 + GFF1300 0.44 +0.3
632,239 + GFF1300 0.44 -0.0
632,239 + GFF1300 0.44 -0.3
632,239 + GFF1300 0.44 +0.3
632,239 + GFF1300 0.44 -1.9
632,240 - GFF1300 0.44 +0.8
632,240 - GFF1300 0.44 -0.9
632,240 - GFF1300 0.44 +0.3
632,240 - GFF1300 0.44 +0.8
632,240 - GFF1300 0.44 -0.3
632,240 - GFF1300 0.44 -0.1
632,240 - GFF1300 0.44 -0.4
632,240 - GFF1300 0.44 -0.6
632,240 - GFF1300 0.44 +0.0
632,257 + GFF1300 0.48 +0.5
632,257 + GFF1300 0.48 -0.3
632,257 - GFF1300 0.48 -0.3
632,258 - GFF1300 0.48 +0.9
632,258 - GFF1300 0.48 -0.1
632,258 - GFF1300 0.48 +0.0
632,258 - GFF1300 0.48 -1.2
632,260 + GFF1300 0.49 +0.6
632,260 + GFF1300 0.49 -0.3
632,260 + GFF1300 0.49 -0.2
632,261 - GFF1300 0.49 -0.7
632,275 + GFF1300 0.53 +1.7
632,276 - GFF1300 0.53 -1.0
632,276 - GFF1300 0.53 -1.4
632,278 + GFF1300 0.53 -0.3
632,278 + GFF1300 0.53 +0.5
632,278 + GFF1300 0.53 +0.4
632,278 + GFF1300 0.53 +0.1
632,279 - GFF1300 0.53 -0.2
632,279 - GFF1300 0.53 -0.2
632,279 - GFF1300 0.53 -1.0
632,279 - GFF1300 0.53 +0.6
632,279 - GFF1300 0.53 -1.1
632,279 - GFF1300 0.53 -0.2
632,293 + GFF1300 0.57 -1.0
632,457 + -0.8
632,457 + +0.4
632,457 + -0.3
632,457 + +0.1
632,457 + -0.1
632,457 + +0.5
632,458 - +0.3
632,458 - -0.8
632,512 + +0.3
632,679 + GFF1301 0.29 -0.3
632,679 + GFF1301 0.29 +0.2
632,680 - GFF1301 0.29 -0.7
632,680 - GFF1301 0.29 +1.1
632,680 - GFF1301 0.29 -1.0
632,680 - GFF1301 0.29 +0.6
632,876 + GFF1301 0.66 +0.3
632,877 - GFF1301 0.66 -1.9
632,877 - GFF1301 0.66 -0.4
632,877 - GFF1301 0.66 -0.9
632,879 - GFF1301 0.66 +0.5
632,894 + GFF1301 0.69 -0.3
632,894 + GFF1301 0.69 -0.4

Or see this region's nucleotide sequence