Strain Fitness in Variovorax sp. SCN45 around GFF1059

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1058 and GFF1059 are separated by 11 nucleotidesGFF1059 and GFF1060 overlap by 4 nucleotidesGFF1060 and GFF1061 overlap by 22 nucleotides GFF1058 - Pyrimidine ABC transporter, substrate-binding component, at 372,324 to 373,331 GFF1058 GFF1059 - Hydroxymethylpyrimidine ABC transporter, ATPase component, at 373,343 to 374,194 GFF1059 GFF1060 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 374,191 to 374,949 GFF1060 GFF1061 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 374,928 to 375,686 GFF1061 Position (kb) 373 374 375Strain fitness (log2 ratio) -2 -1 0 1 2 3at 372.344 kb on + strandat 372.344 kb on + strandat 372.344 kb on + strandat 372.459 kb on + strand, within GFF1058at 372.459 kb on + strand, within GFF1058at 372.459 kb on + strand, within GFF1058at 372.459 kb on + strand, within GFF1058at 372.459 kb on + strand, within GFF1058at 372.459 kb on + strand, within GFF1058at 372.459 kb on + strand, within GFF1058at 372.460 kb on - strand, within GFF1058at 372.460 kb on - strand, within GFF1058at 372.460 kb on - strand, within GFF1058at 372.460 kb on - strand, within GFF1058at 372.460 kb on - strand, within GFF1058at 372.460 kb on - strand, within GFF1058at 372.460 kb on - strand, within GFF1058at 372.460 kb on - strand, within GFF1058at 372.460 kb on - strand, within GFF1058at 372.483 kb on + strand, within GFF1058at 372.483 kb on + strand, within GFF1058at 372.483 kb on + strand, within GFF1058at 372.483 kb on + strand, within GFF1058at 372.483 kb on + strand, within GFF1058at 372.483 kb on + strand, within GFF1058at 372.483 kb on + strand, within GFF1058at 372.484 kb on - strand, within GFF1058at 372.484 kb on - strand, within GFF1058at 372.484 kb on - strand, within GFF1058at 372.484 kb on - strand, within GFF1058at 372.484 kb on - strand, within GFF1058at 372.484 kb on - strand, within GFF1058at 372.484 kb on - strand, within GFF1058at 372.484 kb on - strand, within GFF1058at 372.669 kb on + strand, within GFF1058at 372.669 kb on + strand, within GFF1058at 372.669 kb on + strand, within GFF1058at 372.669 kb on + strand, within GFF1058at 372.669 kb on + strand, within GFF1058at 372.669 kb on + strand, within GFF1058at 372.670 kb on - strand, within GFF1058at 372.670 kb on - strand, within GFF1058at 372.670 kb on - strand, within GFF1058at 372.670 kb on - strand, within GFF1058at 372.670 kb on - strand, within GFF1058at 372.670 kb on - strand, within GFF1058at 372.670 kb on - strand, within GFF1058at 372.670 kb on - strand, within GFF1058at 372.670 kb on - strand, within GFF1058at 372.678 kb on + strand, within GFF1058at 372.678 kb on + strand, within GFF1058at 372.678 kb on + strand, within GFF1058at 372.678 kb on + strand, within GFF1058at 372.678 kb on + strand, within GFF1058at 372.678 kb on + strand, within GFF1058at 372.678 kb on + strand, within GFF1058at 372.678 kb on + strand, within GFF1058at 372.679 kb on - strand, within GFF1058at 372.753 kb on + strand, within GFF1058at 372.753 kb on + strand, within GFF1058at 372.753 kb on + strand, within GFF1058at 372.754 kb on - strand, within GFF1058at 372.762 kb on + strand, within GFF1058at 372.762 kb on + strand, within GFF1058at 372.762 kb on + strand, within GFF1058at 372.763 kb on - strand, within GFF1058at 372.873 kb on + strand, within GFF1058at 372.873 kb on + strand, within GFF1058at 372.873 kb on + strand, within GFF1058at 372.873 kb on + strand, within GFF1058at 372.874 kb on - strand, within GFF1058at 372.874 kb on - strand, within GFF1058at 372.874 kb on - strand, within GFF1058at 372.876 kb on + strand, within GFF1058at 372.876 kb on + strand, within GFF1058at 372.876 kb on + strand, within GFF1058at 372.876 kb on + strand, within GFF1058at 372.876 kb on + strand, within GFF1058at 372.876 kb on + strand, within GFF1058at 372.876 kb on + strand, within GFF1058at 372.876 kb on + strand, within GFF1058at 372.877 kb on - strand, within GFF1058at 372.877 kb on - strand, within GFF1058at 372.877 kb on - strand, within GFF1058at 372.877 kb on - strand, within GFF1058at 372.877 kb on - strand, within GFF1058at 373.053 kb on + strand, within GFF1058at 373.053 kb on + strand, within GFF1058at 373.054 kb on - strand, within GFF1058at 373.054 kb on - strand, within GFF1058at 373.054 kb on - strand, within GFF1058at 373.242 kb on + strandat 373.242 kb on + strandat 373.242 kb on + strandat 373.242 kb on + strandat 373.242 kb on + strandat 373.242 kb on + strandat 373.281 kb on + strandat 374.266 kb on + strandat 374.266 kb on + strandat 374.266 kb on + strandat 374.266 kb on + strandat 374.266 kb on + strandat 374.266 kb on + strandat 374.267 kb on - strand, within GFF1060at 374.296 kb on + strand, within GFF1060at 374.443 kb on + strand, within GFF1060at 374.443 kb on + strand, within GFF1060at 374.444 kb on - strand, within GFF1060at 375.141 kb on + strand, within GFF1061

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
remove
372,344 + +0.7
372,344 + -0.2
372,344 + -1.1
372,459 + GFF1058 0.13 +0.3
372,459 + GFF1058 0.13 -0.1
372,459 + GFF1058 0.13 -0.4
372,459 + GFF1058 0.13 -0.4
372,459 + GFF1058 0.13 +0.8
372,459 + GFF1058 0.13 +1.7
372,459 + GFF1058 0.13 -2.7
372,460 - GFF1058 0.13 +0.1
372,460 - GFF1058 0.13 +0.6
372,460 - GFF1058 0.13 -0.2
372,460 - GFF1058 0.13 -0.5
372,460 - GFF1058 0.13 -1.1
372,460 - GFF1058 0.13 +0.6
372,460 - GFF1058 0.13 -1.1
372,460 - GFF1058 0.13 -0.7
372,460 - GFF1058 0.13 -1.0
372,483 + GFF1058 0.16 +2.1
372,483 + GFF1058 0.16 +0.3
372,483 + GFF1058 0.16 -0.1
372,483 + GFF1058 0.16 +0.9
372,483 + GFF1058 0.16 +0.3
372,483 + GFF1058 0.16 +1.3
372,483 + GFF1058 0.16 +0.7
372,484 - GFF1058 0.16 -0.6
372,484 - GFF1058 0.16 -0.4
372,484 - GFF1058 0.16 +0.2
372,484 - GFF1058 0.16 -0.2
372,484 - GFF1058 0.16 -0.9
372,484 - GFF1058 0.16 -1.2
372,484 - GFF1058 0.16 -0.4
372,484 - GFF1058 0.16 +0.2
372,669 + GFF1058 0.34 +0.3
372,669 + GFF1058 0.34 -0.1
372,669 + GFF1058 0.34 -0.5
372,669 + GFF1058 0.34 -0.5
372,669 + GFF1058 0.34 +0.3
372,669 + GFF1058 0.34 -0.1
372,670 - GFF1058 0.34 +0.4
372,670 - GFF1058 0.34 -0.4
372,670 - GFF1058 0.34 -0.6
372,670 - GFF1058 0.34 -0.2
372,670 - GFF1058 0.34 -1.8
372,670 - GFF1058 0.34 +0.6
372,670 - GFF1058 0.34 -0.3
372,670 - GFF1058 0.34 -1.2
372,670 - GFF1058 0.34 +0.1
372,678 + GFF1058 0.35 +0.2
372,678 + GFF1058 0.35 -1.0
372,678 + GFF1058 0.35 -2.1
372,678 + GFF1058 0.35 -0.1
372,678 + GFF1058 0.35 -0.6
372,678 + GFF1058 0.35 -0.4
372,678 + GFF1058 0.35 -1.0
372,678 + GFF1058 0.35 -0.3
372,679 - GFF1058 0.35 -0.7
372,753 + GFF1058 0.43 +0.2
372,753 + GFF1058 0.43 -0.2
372,753 + GFF1058 0.43 -0.2
372,754 - GFF1058 0.43 -0.1
372,762 + GFF1058 0.43 -0.2
372,762 + GFF1058 0.43 -0.2
372,762 + GFF1058 0.43 -0.4
372,763 - GFF1058 0.44 -0.4
372,873 + GFF1058 0.54 -0.9
372,873 + GFF1058 0.54 +0.7
372,873 + GFF1058 0.54 -0.2
372,873 + GFF1058 0.54 -0.5
372,874 - GFF1058 0.55 -0.5
372,874 - GFF1058 0.55 -1.7
372,874 - GFF1058 0.55 -0.8
372,876 + GFF1058 0.55 -0.4
372,876 + GFF1058 0.55 -0.5
372,876 + GFF1058 0.55 -0.1
372,876 + GFF1058 0.55 +2.3
372,876 + GFF1058 0.55 +0.3
372,876 + GFF1058 0.55 -0.2
372,876 + GFF1058 0.55 +2.8
372,876 + GFF1058 0.55 +0.5
372,877 - GFF1058 0.55 +1.3
372,877 - GFF1058 0.55 -0.3
372,877 - GFF1058 0.55 +0.5
372,877 - GFF1058 0.55 +0.1
372,877 - GFF1058 0.55 -0.5
373,053 + GFF1058 0.72 +0.0
373,053 + GFF1058 0.72 -0.1
373,054 - GFF1058 0.72 -0.2
373,054 - GFF1058 0.72 +0.4
373,054 - GFF1058 0.72 -0.2
373,242 + -0.0
373,242 + -0.2
373,242 + +0.3
373,242 + -0.6
373,242 + +0.2
373,242 + -0.5
373,281 + -0.4
374,266 + +0.0
374,266 + -0.5
374,266 + -1.2
374,266 + +0.3
374,266 + +0.8
374,266 + -0.5
374,267 - GFF1060 0.10 -0.3
374,296 + GFF1060 0.14 +2.1
374,443 + GFF1060 0.33 -0.1
374,443 + GFF1060 0.33 -0.7
374,444 - GFF1060 0.33 -0.0
375,141 + GFF1061 0.28 -0.1

Or see this region's nucleotide sequence