Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS05945

Experiment: Mucin from porcine stomach type III (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS05940 and ABI39_RS05945 are separated by 191 nucleotidesABI39_RS05945 and ABI39_RS05950 are separated by 155 nucleotidesABI39_RS05950 and ABI39_RS05955 are separated by 75 nucleotides ABI39_RS05940: ABI39_RS05940 - DUF1593 domain-containing protein, at 1,650,750 to 1,652,120 _RS05940 ABI39_RS05945: ABI39_RS05945 - L-aspartate oxidase, at 1,652,312 to 1,653,892 _RS05945 ABI39_RS05950: ABI39_RS05950 - ORF6N domain-containing protein, at 1,654,048 to 1,654,608 _RS05950 ABI39_RS05955: ABI39_RS05955 - PH domain-containing protein, at 1,654,684 to 1,655,094 _RS05955 Position (kb) 1652 1653 1654Strain fitness (log2 ratio) -1 0 1at 1651.398 kb on + strand, within ABI39_RS05940at 1651.398 kb on + strand, within ABI39_RS05940at 1651.398 kb on + strand, within ABI39_RS05940at 1651.399 kb on - strand, within ABI39_RS05940at 1651.399 kb on - strand, within ABI39_RS05940at 1651.399 kb on - strand, within ABI39_RS05940at 1651.449 kb on - strand, within ABI39_RS05940at 1651.505 kb on + strand, within ABI39_RS05940at 1651.505 kb on + strand, within ABI39_RS05940at 1651.505 kb on + strand, within ABI39_RS05940at 1651.551 kb on - strand, within ABI39_RS05940at 1651.577 kb on + strand, within ABI39_RS05940at 1651.586 kb on + strand, within ABI39_RS05940at 1651.588 kb on + strand, within ABI39_RS05940at 1651.588 kb on + strand, within ABI39_RS05940at 1651.588 kb on + strand, within ABI39_RS05940at 1651.589 kb on - strand, within ABI39_RS05940at 1651.716 kb on - strand, within ABI39_RS05940at 1651.838 kb on - strand, within ABI39_RS05940at 1651.915 kb on - strand, within ABI39_RS05940at 1651.966 kb on + strand, within ABI39_RS05940at 1651.996 kb on + strandat 1652.351 kb on - strandat 1652.351 kb on - strandat 1653.942 kb on - strandat 1653.949 kb on - strandat 1654.011 kb on + strandat 1654.096 kb on - strandat 1654.216 kb on + strand, within ABI39_RS05950at 1654.219 kb on - strand, within ABI39_RS05950at 1654.330 kb on + strand, within ABI39_RS05950at 1654.331 kb on - strand, within ABI39_RS05950at 1654.331 kb on - strand, within ABI39_RS05950at 1654.333 kb on - strand, within ABI39_RS05950at 1654.402 kb on - strand, within ABI39_RS05950at 1654.415 kb on + strand, within ABI39_RS05950at 1654.476 kb on - strand, within ABI39_RS05950at 1654.586 kb on + strandat 1654.672 kb on + strandat 1654.710 kb on - strandat 1654.719 kb on + strandat 1654.723 kb on + strandat 1654.723 kb on + strandat 1654.758 kb on - strand, within ABI39_RS05955at 1654.797 kb on - strand, within ABI39_RS05955at 1654.842 kb on + strand, within ABI39_RS05955at 1654.846 kb on + strand, within ABI39_RS05955at 1654.880 kb on - strand, within ABI39_RS05955

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Per-strain Table

Position Strand Gene LocusTag Fraction Mucin from porcine stomach type III (C)
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1,651,398 + ABI39_RS05940 0.47 -0.1
1,651,398 + ABI39_RS05940 0.47 +0.0
1,651,398 + ABI39_RS05940 0.47 +0.2
1,651,399 - ABI39_RS05940 0.47 -0.3
1,651,399 - ABI39_RS05940 0.47 -0.4
1,651,399 - ABI39_RS05940 0.47 -0.2
1,651,449 - ABI39_RS05940 0.51 +0.4
1,651,505 + ABI39_RS05940 0.55 -0.2
1,651,505 + ABI39_RS05940 0.55 +0.1
1,651,505 + ABI39_RS05940 0.55 +0.2
1,651,551 - ABI39_RS05940 0.58 +0.1
1,651,577 + ABI39_RS05940 0.60 -0.1
1,651,586 + ABI39_RS05940 0.61 +0.2
1,651,588 + ABI39_RS05940 0.61 -0.2
1,651,588 + ABI39_RS05940 0.61 +0.9
1,651,588 + ABI39_RS05940 0.61 -0.3
1,651,589 - ABI39_RS05940 0.61 -0.4
1,651,716 - ABI39_RS05940 0.70 +0.4
1,651,838 - ABI39_RS05940 0.79 -0.3
1,651,915 - ABI39_RS05940 0.85 +0.3
1,651,966 + ABI39_RS05940 0.89 +0.1
1,651,996 + +0.0
1,652,351 - +0.4
1,652,351 - -0.4
1,653,942 - +0.3
1,653,949 - -0.8
1,654,011 + -1.3
1,654,096 - +0.1
1,654,216 + ABI39_RS05950 0.30 -0.2
1,654,219 - ABI39_RS05950 0.30 -1.2
1,654,330 + ABI39_RS05950 0.50 +0.1
1,654,331 - ABI39_RS05950 0.50 +0.2
1,654,331 - ABI39_RS05950 0.50 +0.6
1,654,333 - ABI39_RS05950 0.51 -0.3
1,654,402 - ABI39_RS05950 0.63 -1.0
1,654,415 + ABI39_RS05950 0.65 +0.2
1,654,476 - ABI39_RS05950 0.76 -0.1
1,654,586 + -0.1
1,654,672 + +0.2
1,654,710 - -0.4
1,654,719 + +0.3
1,654,723 + -1.2
1,654,723 + +0.3
1,654,758 - ABI39_RS05955 0.18 -1.0
1,654,797 - ABI39_RS05955 0.27 -0.9
1,654,842 + ABI39_RS05955 0.38 -0.1
1,654,846 + ABI39_RS05955 0.39 +0.2
1,654,880 - ABI39_RS05955 0.48 -0.7

Or see this region's nucleotide sequence