Experiment: Mucin from porcine stomach type III (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS01325 and ABI39_RS01330 are separated by 234 nucleotides ABI39_RS01330 and ABI39_RS01335 are separated by 161 nucleotides ABI39_RS01335 and ABI39_RS01340 overlap by 8 nucleotides
ABI39_RS01325: ABI39_RS01325 - phosphoenolpyruvate synthase, at 408,710 to 411,666
_RS01325
ABI39_RS01330: ABI39_RS01330 - NADP-specific glutamate dehydrogenase, at 411,901 to 413,238
_RS01330
ABI39_RS01335: ABI39_RS01335 - hypothetical protein, at 413,400 to 413,792
_RS01335
ABI39_RS01340: ABI39_RS01340 - DUF3440 domain-containing protein, at 413,785 to 415,086
_RS01340
Position (kb) 411
412
413
414 Strain fitness (log2 ratio) -2
-1
0
1 at 410.962 kb on - strand, within ABI39_RS01325 at 410.964 kb on + strand, within ABI39_RS01325 at 410.988 kb on - strand, within ABI39_RS01325 at 411.034 kb on - strand, within ABI39_RS01325 at 411.097 kb on + strand, within ABI39_RS01325 at 411.098 kb on - strand, within ABI39_RS01325 at 411.098 kb on - strand, within ABI39_RS01325 at 411.195 kb on + strand, within ABI39_RS01325 at 411.221 kb on - strand, within ABI39_RS01325 at 411.289 kb on - strand, within ABI39_RS01325 at 411.426 kb on + strand at 411.506 kb on + strand at 411.553 kb on - strand at 411.553 kb on - strand at 411.896 kb on + strand at 411.999 kb on + strand at 412.001 kb on + strand at 412.003 kb on + strand at 412.004 kb on - strand at 412.004 kb on - strand at 412.098 kb on - strand, within ABI39_RS01330 at 412.159 kb on + strand, within ABI39_RS01330 at 412.421 kb on - strand, within ABI39_RS01330 at 412.423 kb on - strand, within ABI39_RS01330 at 412.423 kb on - strand, within ABI39_RS01330 at 412.464 kb on + strand, within ABI39_RS01330 at 412.537 kb on + strand, within ABI39_RS01330 at 412.538 kb on - strand, within ABI39_RS01330 at 412.617 kb on - strand, within ABI39_RS01330 at 412.689 kb on + strand, within ABI39_RS01330 at 412.689 kb on + strand, within ABI39_RS01330 at 412.690 kb on - strand, within ABI39_RS01330 at 412.694 kb on - strand, within ABI39_RS01330 at 412.731 kb on + strand, within ABI39_RS01330 at 412.731 kb on + strand, within ABI39_RS01330 at 412.742 kb on + strand, within ABI39_RS01330 at 412.831 kb on - strand, within ABI39_RS01330 at 412.835 kb on + strand, within ABI39_RS01330 at 412.836 kb on - strand, within ABI39_RS01330 at 412.839 kb on + strand, within ABI39_RS01330 at 412.987 kb on + strand, within ABI39_RS01330 at 412.987 kb on + strand, within ABI39_RS01330 at 412.988 kb on - strand, within ABI39_RS01330 at 413.022 kb on - strand, within ABI39_RS01330 at 413.026 kb on - strand, within ABI39_RS01330 at 413.061 kb on + strand, within ABI39_RS01330 at 413.091 kb on + strand, within ABI39_RS01330 at 413.106 kb on + strand at 413.116 kb on - strand at 413.158 kb on + strand at 413.160 kb on + strand at 413.204 kb on + strand at 413.205 kb on - strand at 413.248 kb on - strand at 413.283 kb on - strand at 413.289 kb on + strand at 413.367 kb on + strand at 413.416 kb on + strand at 413.597 kb on + strand, within ABI39_RS01335 at 413.607 kb on + strand, within ABI39_RS01335 at 413.610 kb on + strand, within ABI39_RS01335 at 413.667 kb on - strand, within ABI39_RS01335 at 413.755 kb on - strand at 413.756 kb on + strand at 413.794 kb on - strand at 413.794 kb on - strand at 413.869 kb on - strand at 413.919 kb on - strand, within ABI39_RS01340 at 413.930 kb on - strand, within ABI39_RS01340 at 413.968 kb on + strand, within ABI39_RS01340 at 414.010 kb on + strand, within ABI39_RS01340 at 414.175 kb on - strand, within ABI39_RS01340 at 414.196 kb on + strand, within ABI39_RS01340 at 414.197 kb on - strand, within ABI39_RS01340
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type III (C) remove 410,962 - ABI39_RS01325 0.76 +0.4 410,964 + ABI39_RS01325 0.76 +0.5 410,988 - ABI39_RS01325 0.77 -1.2 411,034 - ABI39_RS01325 0.79 -0.7 411,097 + ABI39_RS01325 0.81 -0.1 411,098 - ABI39_RS01325 0.81 -0.5 411,098 - ABI39_RS01325 0.81 -0.5 411,195 + ABI39_RS01325 0.84 -0.9 411,221 - ABI39_RS01325 0.85 -0.6 411,289 - ABI39_RS01325 0.87 -0.3 411,426 + -0.7 411,506 + -0.1 411,553 - -0.2 411,553 - +0.6 411,896 + -0.6 411,999 + -1.6 412,001 + -1.3 412,003 + -0.3 412,004 - -1.0 412,004 - -0.5 412,098 - ABI39_RS01330 0.15 -0.3 412,159 + ABI39_RS01330 0.19 +0.5 412,421 - ABI39_RS01330 0.39 +0.8 412,423 - ABI39_RS01330 0.39 -0.8 412,423 - ABI39_RS01330 0.39 -2.4 412,464 + ABI39_RS01330 0.42 -0.5 412,537 + ABI39_RS01330 0.48 -0.3 412,538 - ABI39_RS01330 0.48 -0.6 412,617 - ABI39_RS01330 0.54 -0.8 412,689 + ABI39_RS01330 0.59 -2.2 412,689 + ABI39_RS01330 0.59 +0.3 412,690 - ABI39_RS01330 0.59 -1.8 412,694 - ABI39_RS01330 0.59 -0.2 412,731 + ABI39_RS01330 0.62 -1.4 412,731 + ABI39_RS01330 0.62 +0.7 412,742 + ABI39_RS01330 0.63 +0.0 412,831 - ABI39_RS01330 0.70 -0.1 412,835 + ABI39_RS01330 0.70 -0.6 412,836 - ABI39_RS01330 0.70 -0.4 412,839 + ABI39_RS01330 0.70 -0.8 412,987 + ABI39_RS01330 0.81 -0.7 412,987 + ABI39_RS01330 0.81 -1.2 412,988 - ABI39_RS01330 0.81 -0.6 413,022 - ABI39_RS01330 0.84 -0.1 413,026 - ABI39_RS01330 0.84 -0.4 413,061 + ABI39_RS01330 0.87 -1.2 413,091 + ABI39_RS01330 0.89 -0.7 413,106 + +0.4 413,116 - -1.6 413,158 + +0.2 413,160 + +0.3 413,204 + -0.5 413,205 - -0.2 413,248 - -0.6 413,283 - +0.6 413,289 + +0.7 413,367 + -0.5 413,416 + -0.2 413,597 + ABI39_RS01335 0.50 +0.1 413,607 + ABI39_RS01335 0.53 -0.3 413,610 + ABI39_RS01335 0.53 +0.3 413,667 - ABI39_RS01335 0.68 -0.2 413,755 - -0.3 413,756 + +0.3 413,794 - -0.4 413,794 - -0.8 413,869 - +0.1 413,919 - ABI39_RS01340 0.10 -0.3 413,930 - ABI39_RS01340 0.11 -0.5 413,968 + ABI39_RS01340 0.14 -0.5 414,010 + ABI39_RS01340 0.17 +0.1 414,175 - ABI39_RS01340 0.30 -0.3 414,196 + ABI39_RS01340 0.32 +0.8 414,197 - ABI39_RS01340 0.32 -1.0
Or see this region's nucleotide sequence