Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS22840

Experiment: Xylan from Beechwood (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS18060 and ABI39_RS22840 are separated by 72 nucleotidesABI39_RS22840 and ABI39_RS18065 are separated by 45 nucleotides ABI39_RS18060: ABI39_RS18060 - right-handed parallel beta-helix repeat-containing protein, at 4,554,729 to 4,555,961 _RS18060 ABI39_RS22840: ABI39_RS22840 - right-handed parallel beta-helix repeat-containing protein, at 4,556,034 to 4,556,282 _RS22840 ABI39_RS18065: ABI39_RS18065 - alpha-L-fucosidase, at 4,556,328 to 4,557,269 _RS18065 Position (kb) 4556 4557Strain fitness (log2 ratio) -1 0 1at 4555.108 kb on - strand, within ABI39_RS18060at 4555.137 kb on + strand, within ABI39_RS18060at 4555.137 kb on + strand, within ABI39_RS18060at 4555.137 kb on + strand, within ABI39_RS18060at 4555.139 kb on + strand, within ABI39_RS18060at 4555.140 kb on - strand, within ABI39_RS18060at 4555.161 kb on - strand, within ABI39_RS18060at 4555.396 kb on - strand, within ABI39_RS18060at 4555.445 kb on - strand, within ABI39_RS18060at 4555.445 kb on - strand, within ABI39_RS18060at 4555.501 kb on + strand, within ABI39_RS18060at 4555.522 kb on + strand, within ABI39_RS18060at 4555.531 kb on - strand, within ABI39_RS18060at 4555.611 kb on + strand, within ABI39_RS18060at 4555.619 kb on - strand, within ABI39_RS18060at 4555.806 kb on + strand, within ABI39_RS18060at 4555.806 kb on + strand, within ABI39_RS18060at 4555.860 kb on - strandat 4555.890 kb on + strandat 4555.981 kb on - strandat 4555.984 kb on + strandat 4555.984 kb on + strandat 4556.124 kb on - strand, within ABI39_RS22840at 4556.128 kb on - strand, within ABI39_RS22840at 4556.198 kb on + strand, within ABI39_RS22840at 4556.458 kb on - strand, within ABI39_RS18065at 4556.517 kb on - strand, within ABI39_RS18065at 4556.552 kb on + strand, within ABI39_RS18065at 4556.656 kb on + strand, within ABI39_RS18065at 4556.657 kb on - strand, within ABI39_RS18065at 4556.727 kb on - strand, within ABI39_RS18065at 4556.776 kb on + strand, within ABI39_RS18065at 4556.776 kb on + strand, within ABI39_RS18065at 4556.776 kb on + strand, within ABI39_RS18065at 4556.777 kb on - strand, within ABI39_RS18065at 4556.777 kb on - strand, within ABI39_RS18065at 4556.780 kb on + strand, within ABI39_RS18065at 4556.786 kb on - strand, within ABI39_RS18065at 4556.936 kb on - strand, within ABI39_RS18065at 4556.942 kb on + strand, within ABI39_RS18065at 4556.949 kb on - strand, within ABI39_RS18065at 4556.949 kb on - strand, within ABI39_RS18065at 4556.998 kb on + strand, within ABI39_RS18065at 4556.998 kb on + strand, within ABI39_RS18065at 4556.998 kb on + strand, within ABI39_RS18065at 4557.110 kb on + strand, within ABI39_RS18065at 4557.110 kb on + strand, within ABI39_RS18065at 4557.111 kb on - strand, within ABI39_RS18065at 4557.111 kb on - strand, within ABI39_RS18065at 4557.139 kb on + strand, within ABI39_RS18065at 4557.278 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from Beechwood (C)
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4,555,108 - ABI39_RS18060 0.31 +0.5
4,555,137 + ABI39_RS18060 0.33 +0.2
4,555,137 + ABI39_RS18060 0.33 +0.9
4,555,137 + ABI39_RS18060 0.33 +0.1
4,555,139 + ABI39_RS18060 0.33 +0.5
4,555,140 - ABI39_RS18060 0.33 +0.8
4,555,161 - ABI39_RS18060 0.35 -0.1
4,555,396 - ABI39_RS18060 0.54 +0.7
4,555,445 - ABI39_RS18060 0.58 +0.6
4,555,445 - ABI39_RS18060 0.58 +0.6
4,555,501 + ABI39_RS18060 0.63 -0.4
4,555,522 + ABI39_RS18060 0.64 +0.2
4,555,531 - ABI39_RS18060 0.65 +0.6
4,555,611 + ABI39_RS18060 0.72 -0.6
4,555,619 - ABI39_RS18060 0.72 -0.7
4,555,806 + ABI39_RS18060 0.87 -1.2
4,555,806 + ABI39_RS18060 0.87 +0.1
4,555,860 - +0.3
4,555,890 + -0.6
4,555,981 - -0.1
4,555,984 + -1.5
4,555,984 + +0.1
4,556,124 - ABI39_RS22840 0.36 -0.2
4,556,128 - ABI39_RS22840 0.38 +0.0
4,556,198 + ABI39_RS22840 0.66 +0.3
4,556,458 - ABI39_RS18065 0.14 +0.8
4,556,517 - ABI39_RS18065 0.20 -0.3
4,556,552 + ABI39_RS18065 0.24 -0.7
4,556,656 + ABI39_RS18065 0.35 -0.1
4,556,657 - ABI39_RS18065 0.35 -0.9
4,556,727 - ABI39_RS18065 0.42 -1.1
4,556,776 + ABI39_RS18065 0.48 -0.2
4,556,776 + ABI39_RS18065 0.48 +0.1
4,556,776 + ABI39_RS18065 0.48 -0.1
4,556,777 - ABI39_RS18065 0.48 -0.6
4,556,777 - ABI39_RS18065 0.48 -0.3
4,556,780 + ABI39_RS18065 0.48 +0.2
4,556,786 - ABI39_RS18065 0.49 +0.1
4,556,936 - ABI39_RS18065 0.65 +0.6
4,556,942 + ABI39_RS18065 0.65 +1.1
4,556,949 - ABI39_RS18065 0.66 -0.3
4,556,949 - ABI39_RS18065 0.66 +0.1
4,556,998 + ABI39_RS18065 0.71 -0.3
4,556,998 + ABI39_RS18065 0.71 -0.4
4,556,998 + ABI39_RS18065 0.71 -0.0
4,557,110 + ABI39_RS18065 0.83 +0.3
4,557,110 + ABI39_RS18065 0.83 +0.4
4,557,111 - ABI39_RS18065 0.83 +0.5
4,557,111 - ABI39_RS18065 0.83 -0.1
4,557,139 + ABI39_RS18065 0.86 -0.6
4,557,278 - +0.1

Or see this region's nucleotide sequence