Experiment: Xylan from Beechwood (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS17775 and ABI39_RS17780 are separated by 37 nucleotides ABI39_RS17780 and ABI39_RS17785 are separated by 113 nucleotides ABI39_RS17785 and ABI39_RS17790 are separated by 12 nucleotides ABI39_RS17790 and ABI39_RS17795 are separated by 218 nucleotides
ABI39_RS17775: ABI39_RS17775 - 2-iminoacetate synthase ThiH, at 4,486,042 to 4,487,172
_RS17775
ABI39_RS17780: ABI39_RS17780 - HesA/MoeB/ThiF family protein, at 4,487,210 to 4,487,941
_RS17780
ABI39_RS17785: ABI39_RS17785 - glutathionylspermidine synthase family protein, at 4,488,055 to 4,489,179
_RS17785
ABI39_RS17790: ABI39_RS17790 - hypothetical protein, at 4,489,192 to 4,489,545
_RS17790
ABI39_RS17795: ABI39_RS17795 - thiamine phosphate synthase, at 4,489,764 to 4,490,372
_RS17795
Position (kb) 4488
4489
4490 Strain fitness (log2 ratio) -1
0
1
2 at 4487.073 kb on + strand at 4487.174 kb on + strand at 4487.174 kb on + strand at 4487.174 kb on + strand at 4487.175 kb on - strand at 4487.214 kb on + strand at 4487.329 kb on + strand, within ABI39_RS17780 at 4487.330 kb on - strand, within ABI39_RS17780 at 4487.417 kb on - strand, within ABI39_RS17780 at 4487.421 kb on + strand, within ABI39_RS17780 at 4487.422 kb on - strand, within ABI39_RS17780 at 4487.453 kb on + strand, within ABI39_RS17780 at 4487.599 kb on + strand, within ABI39_RS17780 at 4487.669 kb on + strand, within ABI39_RS17780 at 4487.670 kb on - strand, within ABI39_RS17780 at 4487.673 kb on + strand, within ABI39_RS17780 at 4487.674 kb on - strand, within ABI39_RS17780 at 4487.706 kb on + strand, within ABI39_RS17780 at 4487.824 kb on - strand, within ABI39_RS17780 at 4487.987 kb on - strand at 4488.067 kb on - strand at 4488.067 kb on - strand at 4488.067 kb on - strand at 4488.182 kb on + strand, within ABI39_RS17785 at 4488.212 kb on - strand, within ABI39_RS17785 at 4488.212 kb on - strand, within ABI39_RS17785 at 4488.215 kb on + strand, within ABI39_RS17785 at 4488.216 kb on - strand, within ABI39_RS17785 at 4488.216 kb on - strand, within ABI39_RS17785 at 4488.252 kb on + strand, within ABI39_RS17785 at 4488.253 kb on - strand, within ABI39_RS17785 at 4488.253 kb on - strand, within ABI39_RS17785 at 4488.374 kb on + strand, within ABI39_RS17785 at 4488.399 kb on - strand, within ABI39_RS17785 at 4488.520 kb on - strand, within ABI39_RS17785 at 4488.588 kb on + strand, within ABI39_RS17785 at 4488.588 kb on + strand, within ABI39_RS17785 at 4488.589 kb on - strand, within ABI39_RS17785 at 4488.847 kb on + strand, within ABI39_RS17785 at 4488.874 kb on + strand, within ABI39_RS17785 at 4488.876 kb on + strand, within ABI39_RS17785 at 4488.902 kb on - strand, within ABI39_RS17785 at 4489.346 kb on + strand, within ABI39_RS17790 at 4489.552 kb on - strand at 4489.568 kb on + strand at 4489.598 kb on - strand at 4489.666 kb on - strand at 4489.778 kb on - strand at 4489.795 kb on - strand at 4489.848 kb on - strand, within ABI39_RS17795 at 4489.880 kb on + strand, within ABI39_RS17795 at 4490.022 kb on + strand, within ABI39_RS17795 at 4490.117 kb on + strand, within ABI39_RS17795 at 4490.121 kb on - strand, within ABI39_RS17795
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from Beechwood (C) remove 4,487,073 + +0.4 4,487,174 + -0.4 4,487,174 + +0.4 4,487,174 + -0.3 4,487,175 - +1.2 4,487,214 + +0.5 4,487,329 + ABI39_RS17780 0.16 +0.8 4,487,330 - ABI39_RS17780 0.16 +1.1 4,487,417 - ABI39_RS17780 0.28 +1.3 4,487,421 + ABI39_RS17780 0.29 +0.8 4,487,422 - ABI39_RS17780 0.29 +0.9 4,487,453 + ABI39_RS17780 0.33 +0.9 4,487,599 + ABI39_RS17780 0.53 +0.8 4,487,669 + ABI39_RS17780 0.63 +1.4 4,487,670 - ABI39_RS17780 0.63 +0.8 4,487,673 + ABI39_RS17780 0.63 +0.5 4,487,674 - ABI39_RS17780 0.63 +0.7 4,487,706 + ABI39_RS17780 0.68 +2.0 4,487,824 - ABI39_RS17780 0.84 +1.4 4,487,987 - -0.5 4,488,067 - +1.0 4,488,067 - +0.3 4,488,067 - -0.6 4,488,182 + ABI39_RS17785 0.11 +0.2 4,488,212 - ABI39_RS17785 0.14 -0.2 4,488,212 - ABI39_RS17785 0.14 -0.5 4,488,215 + ABI39_RS17785 0.14 -1.2 4,488,216 - ABI39_RS17785 0.14 -0.2 4,488,216 - ABI39_RS17785 0.14 -0.4 4,488,252 + ABI39_RS17785 0.18 -0.6 4,488,253 - ABI39_RS17785 0.18 +0.2 4,488,253 - ABI39_RS17785 0.18 -0.1 4,488,374 + ABI39_RS17785 0.28 +0.7 4,488,399 - ABI39_RS17785 0.31 +0.1 4,488,520 - ABI39_RS17785 0.41 +0.3 4,488,588 + ABI39_RS17785 0.47 +0.5 4,488,588 + ABI39_RS17785 0.47 -0.4 4,488,589 - ABI39_RS17785 0.47 +0.5 4,488,847 + ABI39_RS17785 0.70 +0.3 4,488,874 + ABI39_RS17785 0.73 -0.3 4,488,876 + ABI39_RS17785 0.73 +0.6 4,488,902 - ABI39_RS17785 0.75 +0.2 4,489,346 + ABI39_RS17790 0.44 -0.4 4,489,552 - +0.2 4,489,568 + -0.4 4,489,598 - +0.3 4,489,666 - +1.7 4,489,778 - +0.2 4,489,795 - -0.8 4,489,848 - ABI39_RS17795 0.14 +0.1 4,489,880 + ABI39_RS17795 0.19 +0.8 4,490,022 + ABI39_RS17795 0.42 +0.5 4,490,117 + ABI39_RS17795 0.58 +0.6 4,490,121 - ABI39_RS17795 0.59 +0.4
Or see this region's nucleotide sequence