Experiment: Xylan from Beechwood (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS00185 and ABI39_RS00190 are separated by 12 nucleotides ABI39_RS00190 and ABI39_RS00195 are separated by 39 nucleotides
ABI39_RS00185: ABI39_RS00185 - glycoside hydrolase family 43 protein, at 53,980 to 54,951
_RS00185
ABI39_RS00190: ABI39_RS00190 - endo-1,4-beta-xylanase, at 54,964 to 56,091
_RS00190
ABI39_RS00195: ABI39_RS00195 - MFS transporter, at 56,131 to 57,624
_RS00195
Position (kb) 54
55
56
57 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 53.993 kb on - strand at 54.110 kb on + strand, within ABI39_RS00185 at 54.192 kb on + strand, within ABI39_RS00185 at 54.504 kb on + strand, within ABI39_RS00185 at 54.506 kb on + strand, within ABI39_RS00185 at 54.507 kb on - strand, within ABI39_RS00185 at 54.509 kb on + strand, within ABI39_RS00185 at 54.509 kb on + strand, within ABI39_RS00185 at 54.546 kb on + strand, within ABI39_RS00185 at 54.657 kb on - strand, within ABI39_RS00185 at 54.657 kb on - strand, within ABI39_RS00185 at 54.660 kb on + strand, within ABI39_RS00185 at 54.662 kb on + strand, within ABI39_RS00185 at 54.666 kb on - strand, within ABI39_RS00185 at 54.783 kb on + strand, within ABI39_RS00185 at 54.866 kb on + strand at 54.866 kb on + strand at 54.915 kb on - strand at 55.225 kb on - strand, within ABI39_RS00190 at 55.225 kb on - strand, within ABI39_RS00190 at 55.333 kb on - strand, within ABI39_RS00190 at 55.386 kb on + strand, within ABI39_RS00190 at 55.484 kb on + strand, within ABI39_RS00190 at 55.530 kb on + strand, within ABI39_RS00190 at 55.562 kb on + strand, within ABI39_RS00190 at 55.627 kb on + strand, within ABI39_RS00190 at 55.629 kb on + strand, within ABI39_RS00190 at 55.641 kb on - strand, within ABI39_RS00190 at 55.653 kb on + strand, within ABI39_RS00190 at 55.890 kb on + strand, within ABI39_RS00190 at 55.946 kb on - strand, within ABI39_RS00190 at 56.079 kb on - strand at 56.079 kb on - strand at 56.095 kb on - strand at 56.145 kb on + strand at 56.205 kb on - strand at 56.318 kb on + strand, within ABI39_RS00195 at 56.389 kb on + strand, within ABI39_RS00195 at 56.518 kb on + strand, within ABI39_RS00195 at 56.614 kb on - strand, within ABI39_RS00195 at 56.685 kb on + strand, within ABI39_RS00195 at 56.686 kb on - strand, within ABI39_RS00195 at 56.837 kb on + strand, within ABI39_RS00195 at 56.947 kb on + strand, within ABI39_RS00195 at 56.947 kb on + strand, within ABI39_RS00195 at 56.990 kb on - strand, within ABI39_RS00195 at 57.060 kb on + strand, within ABI39_RS00195 at 57.061 kb on - strand, within ABI39_RS00195 at 57.061 kb on - strand, within ABI39_RS00195 at 57.061 kb on - strand, within ABI39_RS00195
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from Beechwood (C) remove 53,993 - +0.2 54,110 + ABI39_RS00185 0.13 -3.2 54,192 + ABI39_RS00185 0.22 -2.5 54,504 + ABI39_RS00185 0.54 -5.1 54,506 + ABI39_RS00185 0.54 -4.5 54,507 - ABI39_RS00185 0.54 -4.5 54,509 + ABI39_RS00185 0.54 -5.6 54,509 + ABI39_RS00185 0.54 -5.5 54,546 + ABI39_RS00185 0.58 -4.0 54,657 - ABI39_RS00185 0.70 -3.3 54,657 - ABI39_RS00185 0.70 -5.8 54,660 + ABI39_RS00185 0.70 -3.7 54,662 + ABI39_RS00185 0.70 -3.4 54,666 - ABI39_RS00185 0.71 -6.0 54,783 + ABI39_RS00185 0.83 -3.0 54,866 + -4.4 54,866 + -5.6 54,915 - -4.5 55,225 - ABI39_RS00190 0.23 -3.1 55,225 - ABI39_RS00190 0.23 -3.0 55,333 - ABI39_RS00190 0.33 -1.9 55,386 + ABI39_RS00190 0.37 -2.8 55,484 + ABI39_RS00190 0.46 -4.1 55,530 + ABI39_RS00190 0.50 -3.1 55,562 + ABI39_RS00190 0.53 -4.0 55,627 + ABI39_RS00190 0.59 -3.8 55,629 + ABI39_RS00190 0.59 -2.8 55,641 - ABI39_RS00190 0.60 -2.3 55,653 + ABI39_RS00190 0.61 -4.3 55,890 + ABI39_RS00190 0.82 -4.5 55,946 - ABI39_RS00190 0.87 -2.2 56,079 - -2.8 56,079 - -2.0 56,095 - -1.4 56,145 + -2.3 56,205 - -5.0 56,318 + ABI39_RS00195 0.13 -3.5 56,389 + ABI39_RS00195 0.17 -1.8 56,518 + ABI39_RS00195 0.26 -2.7 56,614 - ABI39_RS00195 0.32 -3.0 56,685 + ABI39_RS00195 0.37 -4.4 56,686 - ABI39_RS00195 0.37 -4.0 56,837 + ABI39_RS00195 0.47 -2.7 56,947 + ABI39_RS00195 0.55 -3.3 56,947 + ABI39_RS00195 0.55 -3.3 56,990 - ABI39_RS00195 0.57 -4.7 57,060 + ABI39_RS00195 0.62 -4.7 57,061 - ABI39_RS00195 0.62 -2.9 57,061 - ABI39_RS00195 0.62 -4.5 57,061 - ABI39_RS00195 0.62 -3.7
Or see this region's nucleotide sequence