Experiment: Xylan from Beechwood (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS00160 and ABI39_RS00165 are separated by 375 nucleotides ABI39_RS00165 and ABI39_RS00170 are separated by 626 nucleotides
ABI39_RS00160: ABI39_RS00160 - glycosyl hydrolase 43 family protein, at 40,194 to 41,777
_RS00160
ABI39_RS00165: ABI39_RS00165 - response regulator, at 42,153 to 46,205
_RS00165
ABI39_RS00170: ABI39_RS00170 - RagB/SusD family nutrient uptake outer membrane protein, at 46,832 to 48,766
_RS00170
Position (kb) 42
43
44
45
46
47 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 41.401 kb on + strand, within ABI39_RS00160 at 41.401 kb on + strand, within ABI39_RS00160 at 41.405 kb on + strand, within ABI39_RS00160 at 41.408 kb on - strand, within ABI39_RS00160 at 41.442 kb on + strand, within ABI39_RS00160 at 41.446 kb on + strand, within ABI39_RS00160 at 41.447 kb on - strand, within ABI39_RS00160 at 41.497 kb on + strand, within ABI39_RS00160 at 41.497 kb on + strand, within ABI39_RS00160 at 41.500 kb on - strand, within ABI39_RS00160 at 41.621 kb on + strand at 41.621 kb on + strand at 41.641 kb on + strand at 41.645 kb on - strand at 41.754 kb on - strand at 41.756 kb on + strand at 41.760 kb on - strand at 42.019 kb on + strand at 42.019 kb on + strand at 42.019 kb on + strand at 42.023 kb on + strand at 42.099 kb on - strand at 42.101 kb on - strand at 42.101 kb on - strand at 42.145 kb on - strand at 42.147 kb on + strand at 42.148 kb on - strand at 42.150 kb on - strand at 42.271 kb on - strand at 42.348 kb on + strand at 42.391 kb on - strand at 42.441 kb on + strand at 42.441 kb on + strand at 42.441 kb on + strand at 42.441 kb on + strand at 42.442 kb on - strand at 42.452 kb on - strand at 42.452 kb on - strand at 42.548 kb on + strand at 42.563 kb on - strand, within ABI39_RS00165 at 42.714 kb on - strand, within ABI39_RS00165 at 42.738 kb on - strand, within ABI39_RS00165 at 42.789 kb on + strand, within ABI39_RS00165 at 43.020 kb on - strand, within ABI39_RS00165 at 43.020 kb on - strand, within ABI39_RS00165 at 43.024 kb on - strand, within ABI39_RS00165 at 43.147 kb on + strand, within ABI39_RS00165 at 43.148 kb on - strand, within ABI39_RS00165 at 43.172 kb on + strand, within ABI39_RS00165 at 43.173 kb on - strand, within ABI39_RS00165 at 43.223 kb on - strand, within ABI39_RS00165 at 43.255 kb on - strand, within ABI39_RS00165 at 43.291 kb on - strand, within ABI39_RS00165 at 43.342 kb on - strand, within ABI39_RS00165 at 43.426 kb on - strand, within ABI39_RS00165 at 43.667 kb on - strand, within ABI39_RS00165 at 43.673 kb on + strand, within ABI39_RS00165 at 43.676 kb on - strand, within ABI39_RS00165 at 43.741 kb on - strand, within ABI39_RS00165 at 43.861 kb on - strand, within ABI39_RS00165 at 43.861 kb on - strand, within ABI39_RS00165 at 43.957 kb on - strand, within ABI39_RS00165 at 43.957 kb on - strand, within ABI39_RS00165 at 44.173 kb on + strand, within ABI39_RS00165 at 44.284 kb on + strand, within ABI39_RS00165 at 44.289 kb on - strand, within ABI39_RS00165 at 44.294 kb on - strand, within ABI39_RS00165 at 44.476 kb on - strand, within ABI39_RS00165 at 44.562 kb on - strand, within ABI39_RS00165 at 44.624 kb on - strand, within ABI39_RS00165 at 44.624 kb on - strand, within ABI39_RS00165 at 44.703 kb on + strand, within ABI39_RS00165 at 44.764 kb on + strand, within ABI39_RS00165 at 44.876 kb on + strand, within ABI39_RS00165 at 45.132 kb on + strand, within ABI39_RS00165 at 45.270 kb on - strand, within ABI39_RS00165 at 45.465 kb on - strand, within ABI39_RS00165 at 45.465 kb on - strand, within ABI39_RS00165 at 45.562 kb on + strand, within ABI39_RS00165 at 45.563 kb on - strand, within ABI39_RS00165 at 45.715 kb on - strand, within ABI39_RS00165 at 45.742 kb on + strand, within ABI39_RS00165 at 45.799 kb on - strand, within ABI39_RS00165 at 45.830 kb on - strand at 45.830 kb on - strand at 45.943 kb on + strand at 46.157 kb on - strand at 46.158 kb on + strand at 46.158 kb on + strand at 46.316 kb on - strand at 46.316 kb on - strand at 46.316 kb on - strand at 46.316 kb on - strand at 46.320 kb on - strand at 46.320 kb on - strand at 46.322 kb on - strand at 46.541 kb on + strand at 46.568 kb on + strand at 46.657 kb on + strand at 47.172 kb on + strand, within ABI39_RS00170 at 47.172 kb on + strand, within ABI39_RS00170 at 47.172 kb on + strand, within ABI39_RS00170
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from Beechwood (C) remove 41,401 + ABI39_RS00160 0.76 -1.5 41,401 + ABI39_RS00160 0.76 -1.1 41,405 + ABI39_RS00160 0.76 -1.6 41,408 - ABI39_RS00160 0.77 -0.2 41,442 + ABI39_RS00160 0.79 -1.6 41,446 + ABI39_RS00160 0.79 -1.8 41,447 - ABI39_RS00160 0.79 +0.4 41,497 + ABI39_RS00160 0.82 -1.6 41,497 + ABI39_RS00160 0.82 -2.4 41,500 - ABI39_RS00160 0.82 -1.0 41,621 + -1.8 41,621 + -0.5 41,641 + -1.9 41,645 - +0.1 41,754 - -0.5 41,756 + -1.5 41,760 - -0.4 42,019 + +0.3 42,019 + -1.0 42,019 + -1.2 42,023 + -0.8 42,099 - -5.4 42,101 - -3.1 42,101 - -4.0 42,145 - -5.0 42,147 + +0.3 42,148 - -3.0 42,150 - -4.7 42,271 - -3.3 42,348 + -4.1 42,391 - -3.3 42,441 + -5.1 42,441 + -4.5 42,441 + -5.2 42,441 + -5.0 42,442 - -2.9 42,452 - -3.1 42,452 - -3.9 42,548 + -5.4 42,563 - ABI39_RS00165 0.10 -2.5 42,714 - ABI39_RS00165 0.14 -4.4 42,738 - ABI39_RS00165 0.14 -3.5 42,789 + ABI39_RS00165 0.16 -2.8 43,020 - ABI39_RS00165 0.21 -1.3 43,020 - ABI39_RS00165 0.21 -4.7 43,024 - ABI39_RS00165 0.21 -3.9 43,147 + ABI39_RS00165 0.25 -5.6 43,148 - ABI39_RS00165 0.25 -4.0 43,172 + ABI39_RS00165 0.25 -4.3 43,173 - ABI39_RS00165 0.25 -3.8 43,223 - ABI39_RS00165 0.26 -4.7 43,255 - ABI39_RS00165 0.27 -4.2 43,291 - ABI39_RS00165 0.28 -2.2 43,342 - ABI39_RS00165 0.29 -4.2 43,426 - ABI39_RS00165 0.31 -4.8 43,667 - ABI39_RS00165 0.37 -0.7 43,673 + ABI39_RS00165 0.38 -4.0 43,676 - ABI39_RS00165 0.38 -4.6 43,741 - ABI39_RS00165 0.39 -5.2 43,861 - ABI39_RS00165 0.42 -3.6 43,861 - ABI39_RS00165 0.42 -4.8 43,957 - ABI39_RS00165 0.45 -5.2 43,957 - ABI39_RS00165 0.45 -6.0 44,173 + ABI39_RS00165 0.50 -2.8 44,284 + ABI39_RS00165 0.53 -2.7 44,289 - ABI39_RS00165 0.53 -4.1 44,294 - ABI39_RS00165 0.53 -2.4 44,476 - ABI39_RS00165 0.57 -2.6 44,562 - ABI39_RS00165 0.59 -2.4 44,624 - ABI39_RS00165 0.61 -2.1 44,624 - ABI39_RS00165 0.61 -4.4 44,703 + ABI39_RS00165 0.63 -2.7 44,764 + ABI39_RS00165 0.64 -4.5 44,876 + ABI39_RS00165 0.67 -4.2 45,132 + ABI39_RS00165 0.74 -5.6 45,270 - ABI39_RS00165 0.77 -3.4 45,465 - ABI39_RS00165 0.82 -3.4 45,465 - ABI39_RS00165 0.82 -5.1 45,562 + ABI39_RS00165 0.84 -3.0 45,563 - ABI39_RS00165 0.84 -3.4 45,715 - ABI39_RS00165 0.88 -3.2 45,742 + ABI39_RS00165 0.89 -5.7 45,799 - ABI39_RS00165 0.90 -4.5 45,830 - -3.0 45,830 - -3.3 45,943 + -5.0 46,157 - -2.3 46,158 + -4.4 46,158 + -5.4 46,316 - -0.8 46,316 - +0.5 46,316 - -0.4 46,316 - -0.1 46,320 - -0.4 46,320 - -0.3 46,322 - +0.1 46,541 + -0.4 46,568 + +0.9 46,657 + +0.3 47,172 + ABI39_RS00170 0.18 -4.8 47,172 + ABI39_RS00170 0.18 -3.7 47,172 + ABI39_RS00170 0.18 -3.6
Or see this region's nucleotide sequence