Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS11370

Experiment: Fructose-6-phosphate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS11365 and ABI39_RS11370 overlap by 4 nucleotidesABI39_RS11370 and ABI39_RS11375 are separated by 152 nucleotidesABI39_RS11375 and ABI39_RS11380 are separated by 41 nucleotides ABI39_RS11365: ABI39_RS11365 - dihydroorotase, at 3,022,958 to 3,024,298 _RS11365 ABI39_RS11370: ABI39_RS11370 - polyprenol monophosphomannose synthase, at 3,024,295 to 3,025,044 _RS11370 ABI39_RS11375: ABI39_RS11375 - outer membrane beta-barrel protein, at 3,025,197 to 3,025,823 _RS11375 ABI39_RS11380: ABI39_RS11380 - DUF4136 domain-containing protein, at 3,025,865 to 3,026,503 _RS11380 Position (kb) 3024 3025 3026Strain fitness (log2 ratio) -1 0 1 2at 3023.378 kb on + strand, within ABI39_RS11365at 3023.688 kb on - strand, within ABI39_RS11365at 3024.071 kb on + strand, within ABI39_RS11365at 3024.141 kb on + strand, within ABI39_RS11365at 3025.076 kb on - strandat 3025.258 kb on - strandat 3025.279 kb on + strand, within ABI39_RS11375at 3025.327 kb on + strand, within ABI39_RS11375at 3025.357 kb on - strand, within ABI39_RS11375at 3025.358 kb on - strand, within ABI39_RS11375at 3025.358 kb on - strand, within ABI39_RS11375at 3025.394 kb on - strand, within ABI39_RS11375at 3025.418 kb on - strand, within ABI39_RS11375at 3025.592 kb on - strand, within ABI39_RS11375at 3025.627 kb on - strand, within ABI39_RS11375at 3025.627 kb on - strand, within ABI39_RS11375at 3025.630 kb on + strand, within ABI39_RS11375at 3025.630 kb on + strand, within ABI39_RS11375at 3025.714 kb on - strand, within ABI39_RS11375at 3025.834 kb on + strandat 3025.847 kb on + strandat 3025.919 kb on - strandat 3026.023 kb on + strand, within ABI39_RS11380

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Per-strain Table

Position Strand Gene LocusTag Fraction Fructose-6-phosphate (C)
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3,023,378 + ABI39_RS11365 0.31 +1.1
3,023,688 - ABI39_RS11365 0.54 +2.6
3,024,071 + ABI39_RS11365 0.83 +1.1
3,024,141 + ABI39_RS11365 0.88 +1.6
3,025,076 - -0.7
3,025,258 - -1.1
3,025,279 + ABI39_RS11375 0.13 -1.0
3,025,327 + ABI39_RS11375 0.21 +0.7
3,025,357 - ABI39_RS11375 0.26 +1.8
3,025,358 - ABI39_RS11375 0.26 +1.3
3,025,358 - ABI39_RS11375 0.26 +0.8
3,025,394 - ABI39_RS11375 0.31 +1.4
3,025,418 - ABI39_RS11375 0.35 +0.8
3,025,592 - ABI39_RS11375 0.63 +2.1
3,025,627 - ABI39_RS11375 0.69 +0.7
3,025,627 - ABI39_RS11375 0.69 +0.2
3,025,630 + ABI39_RS11375 0.69 +0.4
3,025,630 + ABI39_RS11375 0.69 +1.1
3,025,714 - ABI39_RS11375 0.82 +2.0
3,025,834 + +1.1
3,025,847 + -0.7
3,025,919 - +0.6
3,026,023 + ABI39_RS11380 0.25 +1.3

Or see this region's nucleotide sequence