Experiment: Fructose-6-phosphate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS21175 and ABI39_RS21180 are separated by 207 nucleotides ABI39_RS21180 and ABI39_RS21185 are separated by 114 nucleotides ABI39_RS21185 and ABI39_RS21190 are separated by 305 nucleotides
ABI39_RS21175: ABI39_RS21175 - FecR domain-containing protein, at 5,213,429 to 5,214,511
_RS21175
ABI39_RS21180: ABI39_RS21180 - sigma-70 family RNA polymerase sigma factor, at 5,214,719 to 5,215,354
_RS21180
ABI39_RS21185: ABI39_RS21185 - ROK family transcriptional regulator, at 5,215,469 to 5,216,674
_RS21185
ABI39_RS21190: ABI39_RS21190 - dihydrodipicolinate synthase family protein, at 5,216,980 to 5,217,894
_RS21190
Position (kb) 5215
5216
5217 Strain fitness (log2 ratio) -2
-1
0
1 at 5214.604 kb on + strand at 5214.626 kb on + strand at 5214.661 kb on - strand at 5214.746 kb on - strand at 5214.911 kb on + strand, within ABI39_RS21180 at 5214.915 kb on + strand, within ABI39_RS21180 at 5215.026 kb on - strand, within ABI39_RS21180 at 5215.083 kb on - strand, within ABI39_RS21180 at 5215.140 kb on - strand, within ABI39_RS21180 at 5215.140 kb on - strand, within ABI39_RS21180 at 5215.172 kb on + strand, within ABI39_RS21180 at 5215.230 kb on - strand, within ABI39_RS21180 at 5215.251 kb on + strand, within ABI39_RS21180 at 5215.252 kb on - strand, within ABI39_RS21180 at 5215.252 kb on - strand, within ABI39_RS21180 at 5215.346 kb on - strand at 5215.376 kb on + strand at 5215.418 kb on - strand at 5215.460 kb on - strand at 5215.498 kb on + strand at 5215.534 kb on + strand at 5215.652 kb on + strand, within ABI39_RS21185 at 5215.675 kb on + strand, within ABI39_RS21185 at 5215.766 kb on - strand, within ABI39_RS21185 at 5215.835 kb on - strand, within ABI39_RS21185 at 5215.835 kb on - strand, within ABI39_RS21185 at 5215.993 kb on + strand, within ABI39_RS21185 at 5216.027 kb on - strand, within ABI39_RS21185 at 5216.065 kb on + strand, within ABI39_RS21185 at 5216.068 kb on - strand, within ABI39_RS21185 at 5216.068 kb on - strand, within ABI39_RS21185 at 5216.179 kb on - strand, within ABI39_RS21185 at 5216.182 kb on + strand, within ABI39_RS21185 at 5216.182 kb on + strand, within ABI39_RS21185 at 5216.183 kb on - strand, within ABI39_RS21185 at 5216.219 kb on + strand, within ABI39_RS21185 at 5216.239 kb on + strand, within ABI39_RS21185 at 5216.592 kb on + strand at 5216.599 kb on - strand at 5217.016 kb on - strand at 5217.026 kb on - strand at 5217.047 kb on - strand at 5217.064 kb on + strand at 5217.130 kb on + strand, within ABI39_RS21190 at 5217.133 kb on - strand, within ABI39_RS21190 at 5217.183 kb on - strand, within ABI39_RS21190 at 5217.353 kb on + strand, within ABI39_RS21190 at 5217.500 kb on - strand, within ABI39_RS21190 at 5217.506 kb on - strand, within ABI39_RS21190
Per-strain Table
Position Strand Gene LocusTag Fraction Fructose-6-phosphate (C) remove 5,214,604 + -0.9 5,214,626 + -1.2 5,214,661 - -1.2 5,214,746 - -0.6 5,214,911 + ABI39_RS21180 0.30 +0.1 5,214,915 + ABI39_RS21180 0.31 +0.6 5,215,026 - ABI39_RS21180 0.48 -0.2 5,215,083 - ABI39_RS21180 0.57 -0.6 5,215,140 - ABI39_RS21180 0.66 -0.6 5,215,140 - ABI39_RS21180 0.66 -0.8 5,215,172 + ABI39_RS21180 0.71 +0.3 5,215,230 - ABI39_RS21180 0.80 -0.2 5,215,251 + ABI39_RS21180 0.84 -0.8 5,215,252 - ABI39_RS21180 0.84 -0.4 5,215,252 - ABI39_RS21180 0.84 +0.8 5,215,346 - +0.1 5,215,376 + -0.1 5,215,418 - -0.2 5,215,460 - +0.1 5,215,498 + -2.2 5,215,534 + -0.7 5,215,652 + ABI39_RS21185 0.15 +0.9 5,215,675 + ABI39_RS21185 0.17 -1.3 5,215,766 - ABI39_RS21185 0.25 +1.4 5,215,835 - ABI39_RS21185 0.30 -0.7 5,215,835 - ABI39_RS21185 0.30 -1.2 5,215,993 + ABI39_RS21185 0.43 -0.5 5,216,027 - ABI39_RS21185 0.46 -1.2 5,216,065 + ABI39_RS21185 0.49 -1.5 5,216,068 - ABI39_RS21185 0.50 -1.4 5,216,068 - ABI39_RS21185 0.50 -0.3 5,216,179 - ABI39_RS21185 0.59 -0.3 5,216,182 + ABI39_RS21185 0.59 -0.6 5,216,182 + ABI39_RS21185 0.59 +0.3 5,216,183 - ABI39_RS21185 0.59 -0.7 5,216,219 + ABI39_RS21185 0.62 -1.0 5,216,239 + ABI39_RS21185 0.64 -0.7 5,216,592 + -1.0 5,216,599 - -0.6 5,217,016 - +1.1 5,217,026 - +0.6 5,217,047 - +1.3 5,217,064 + -0.9 5,217,130 + ABI39_RS21190 0.16 -1.2 5,217,133 - ABI39_RS21190 0.17 +1.3 5,217,183 - ABI39_RS21190 0.22 -0.6 5,217,353 + ABI39_RS21190 0.41 +0.9 5,217,500 - ABI39_RS21190 0.57 +0.7 5,217,506 - ABI39_RS21190 0.57 +0.6
Or see this region's nucleotide sequence