Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS06010

Experiment: Fructose-6-phosphate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABI39_RS06005 and ABI39_RS06010 are separated by 23 nucleotidesABI39_RS06010 and ABI39_RS06015 are separated by 70 nucleotides ABI39_RS06005: ABI39_RS06005 - beta-glucosidase, at 1,668,551 to 1,669,908 _RS06005 ABI39_RS06010: ABI39_RS06010 - polysaccharide deacetylase family protein, at 1,669,932 to 1,670,543 _RS06010 ABI39_RS06015: ABI39_RS06015 - DUF2723 domain-containing protein, at 1,670,614 to 1,674,018 _RS06015 Position (kb) 1669 1670 1671Strain fitness (log2 ratio) -2 -1 0 1at 1668.941 kb on - strand, within ABI39_RS06005at 1668.996 kb on + strand, within ABI39_RS06005at 1669.065 kb on - strand, within ABI39_RS06005at 1669.065 kb on - strand, within ABI39_RS06005at 1669.065 kb on - strand, within ABI39_RS06005at 1669.231 kb on - strand, within ABI39_RS06005at 1669.236 kb on + strand, within ABI39_RS06005at 1669.237 kb on + strand, within ABI39_RS06005at 1669.237 kb on - strand, within ABI39_RS06005at 1669.242 kb on + strand, within ABI39_RS06005at 1669.523 kb on - strand, within ABI39_RS06005at 1669.680 kb on - strand, within ABI39_RS06005at 1669.800 kb on - strandat 1669.848 kb on + strandat 1669.898 kb on - strandat 1669.900 kb on - strandat 1669.942 kb on - strandat 1669.997 kb on - strand, within ABI39_RS06010at 1670.060 kb on - strand, within ABI39_RS06010at 1670.068 kb on - strand, within ABI39_RS06010at 1670.164 kb on + strand, within ABI39_RS06010at 1670.165 kb on - strand, within ABI39_RS06010at 1670.249 kb on - strand, within ABI39_RS06010at 1670.286 kb on - strand, within ABI39_RS06010at 1670.384 kb on + strand, within ABI39_RS06010at 1670.387 kb on + strand, within ABI39_RS06010at 1670.388 kb on - strand, within ABI39_RS06010at 1670.388 kb on - strand, within ABI39_RS06010at 1670.568 kb on + strandat 1670.574 kb on + strandat 1670.577 kb on - strandat 1670.639 kb on - strandat 1670.859 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fructose-6-phosphate (C)
remove
1,668,941 - ABI39_RS06005 0.29 +0.5
1,668,996 + ABI39_RS06005 0.33 -0.8
1,669,065 - ABI39_RS06005 0.38 -0.2
1,669,065 - ABI39_RS06005 0.38 -0.2
1,669,065 - ABI39_RS06005 0.38 -0.3
1,669,231 - ABI39_RS06005 0.50 +0.4
1,669,236 + ABI39_RS06005 0.50 -0.3
1,669,237 + ABI39_RS06005 0.51 -0.3
1,669,237 - ABI39_RS06005 0.51 -0.6
1,669,242 + ABI39_RS06005 0.51 -0.6
1,669,523 - ABI39_RS06005 0.72 -1.1
1,669,680 - ABI39_RS06005 0.83 +0.5
1,669,800 - -0.2
1,669,848 + -0.3
1,669,898 - -0.4
1,669,900 - +0.2
1,669,942 - -1.1
1,669,997 - ABI39_RS06010 0.11 -1.7
1,670,060 - ABI39_RS06010 0.21 -0.2
1,670,068 - ABI39_RS06010 0.22 -0.7
1,670,164 + ABI39_RS06010 0.38 -1.5
1,670,165 - ABI39_RS06010 0.38 -1.1
1,670,249 - ABI39_RS06010 0.52 -1.0
1,670,286 - ABI39_RS06010 0.58 -2.0
1,670,384 + ABI39_RS06010 0.74 -0.7
1,670,387 + ABI39_RS06010 0.74 -1.3
1,670,388 - ABI39_RS06010 0.75 -2.0
1,670,388 - ABI39_RS06010 0.75 -1.2
1,670,568 + +0.0
1,670,574 + -0.7
1,670,577 - -1.3
1,670,639 - +0.4
1,670,859 - +0.3

Or see this region's nucleotide sequence