Experiment: MPec2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_22735 and BNILDI_22740 overlap by 17 nucleotides BNILDI_22740 and BNILDI_22745 are separated by 55 nucleotides BNILDI_22745 and yajR are separated by 371 nucleotides
BNILDI_22735: BNILDI_22735 - DUF1778 domain-containing protein, at 4,576,077 to 4,576,388
_22735
BNILDI_22740: BNILDI_22740 - N-acetyltransferase, at 4,576,372 to 4,576,914
_22740
BNILDI_22745: BNILDI_22745 - sel1 repeat family protein, at 4,576,970 to 4,577,941
_22745
BNILDI_22750: yajR - Inner membrane transport protein YajR, at 4,578,313 to 4,579,677
yajR
Position (kb) 4576
4577
4578 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4576.024 kb on + strand at 4576.148 kb on + strand, within BNILDI_22735 at 4576.423 kb on + strand at 4576.424 kb on - strand at 4576.434 kb on + strand, within BNILDI_22740 at 4576.437 kb on + strand, within BNILDI_22740 at 4576.437 kb on + strand, within BNILDI_22740 at 4576.441 kb on + strand, within BNILDI_22740 at 4576.522 kb on - strand, within BNILDI_22740 at 4576.727 kb on + strand, within BNILDI_22740 at 4576.727 kb on + strand, within BNILDI_22740 at 4576.728 kb on - strand, within BNILDI_22740 at 4576.728 kb on - strand, within BNILDI_22740 at 4576.874 kb on + strand at 4576.875 kb on - strand at 4576.912 kb on + strand at 4576.921 kb on - strand at 4577.058 kb on - strand at 4577.058 kb on - strand at 4577.344 kb on + strand, within BNILDI_22745 at 4577.402 kb on - strand, within BNILDI_22745 at 4577.428 kb on - strand, within BNILDI_22745 at 4577.475 kb on - strand, within BNILDI_22745 at 4577.484 kb on + strand, within BNILDI_22745 at 4577.484 kb on + strand, within BNILDI_22745 at 4577.485 kb on - strand, within BNILDI_22745 at 4577.503 kb on + strand, within BNILDI_22745 at 4577.554 kb on + strand, within BNILDI_22745 at 4577.578 kb on - strand, within BNILDI_22745 at 4577.718 kb on + strand, within BNILDI_22745 at 4577.719 kb on - strand, within BNILDI_22745 at 4577.783 kb on + strand, within BNILDI_22745 at 4577.811 kb on + strand, within BNILDI_22745 at 4577.824 kb on - strand, within BNILDI_22745 at 4577.867 kb on + strand at 4577.885 kb on + strand at 4577.900 kb on + strand at 4577.932 kb on - strand at 4578.221 kb on + strand at 4578.285 kb on + strand at 4578.286 kb on - strand at 4578.325 kb on - strand at 4578.371 kb on + strand at 4578.372 kb on - strand at 4578.399 kb on + strand at 4578.459 kb on - strand, within yajR at 4578.481 kb on + strand, within yajR at 4578.482 kb on - strand, within yajR at 4578.482 kb on - strand, within yajR at 4578.551 kb on + strand, within yajR at 4578.552 kb on - strand, within yajR at 4578.828 kb on + strand, within yajR at 4578.829 kb on - strand, within yajR at 4578.891 kb on - strand, within yajR at 4578.891 kb on - strand, within yajR at 4578.894 kb on + strand, within yajR
Per-strain Table
Position Strand Gene LocusTag Fraction MPec2 remove 4,576,024 + -0.1 4,576,148 + BNILDI_22735 0.23 -1.2 4,576,423 + +0.5 4,576,424 - +0.8 4,576,434 + BNILDI_22740 0.11 -2.3 4,576,437 + BNILDI_22740 0.12 +0.0 4,576,437 + BNILDI_22740 0.12 -0.2 4,576,441 + BNILDI_22740 0.13 -0.8 4,576,522 - BNILDI_22740 0.28 -0.4 4,576,727 + BNILDI_22740 0.65 -0.7 4,576,727 + BNILDI_22740 0.65 +1.9 4,576,728 - BNILDI_22740 0.66 +0.6 4,576,728 - BNILDI_22740 0.66 -0.4 4,576,874 + -0.1 4,576,875 - +1.9 4,576,912 + +0.6 4,576,921 - -0.3 4,577,058 - +0.4 4,577,058 - +0.5 4,577,344 + BNILDI_22745 0.38 +0.3 4,577,402 - BNILDI_22745 0.44 +0.3 4,577,428 - BNILDI_22745 0.47 -0.7 4,577,475 - BNILDI_22745 0.52 -0.7 4,577,484 + BNILDI_22745 0.53 -0.2 4,577,484 + BNILDI_22745 0.53 -0.1 4,577,485 - BNILDI_22745 0.53 +1.9 4,577,503 + BNILDI_22745 0.55 +1.2 4,577,554 + BNILDI_22745 0.60 +0.1 4,577,578 - BNILDI_22745 0.63 -0.0 4,577,718 + BNILDI_22745 0.77 -0.4 4,577,719 - BNILDI_22745 0.77 -0.1 4,577,783 + BNILDI_22745 0.84 +1.6 4,577,811 + BNILDI_22745 0.87 +1.3 4,577,824 - BNILDI_22745 0.88 +0.3 4,577,867 + -0.0 4,577,885 + -1.2 4,577,900 + +1.9 4,577,932 - -0.2 4,578,221 + -0.3 4,578,285 + -0.2 4,578,286 - -0.2 4,578,325 - -0.7 4,578,371 + +0.0 4,578,372 - +2.3 4,578,399 + +0.1 4,578,459 - yajR BNILDI_22750 0.11 -0.4 4,578,481 + yajR BNILDI_22750 0.12 -0.7 4,578,482 - yajR BNILDI_22750 0.12 -0.1 4,578,482 - yajR BNILDI_22750 0.12 -1.1 4,578,551 + yajR BNILDI_22750 0.17 -0.4 4,578,552 - yajR BNILDI_22750 0.18 -0.9 4,578,828 + yajR BNILDI_22750 0.38 +0.2 4,578,829 - yajR BNILDI_22750 0.38 +0.3 4,578,891 - yajR BNILDI_22750 0.42 -0.4 4,578,891 - yajR BNILDI_22750 0.42 -0.7 4,578,894 + yajR BNILDI_22750 0.43 -2.0
Or see this region's nucleotide sequence