Experiment: MPec2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybbP and ybbA overlap by 4 nucleotides ybbA and tesA are separated by 0 nucleotides tesA and ybbO are separated by 28 nucleotides ybbO and cnoX are separated by 60 nucleotides
BNILDI_22375: ybbP - Uncharacterized ABC transporter permease YbbP, at 4,500,183 to 4,502,597
ybbP
BNILDI_22380: ybbA - ABC transporter ATP-binding protein, at 4,502,594 to 4,503,280
ybbA
BNILDI_22385: tesA - multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1, at 4,503,281 to 4,503,874
tesA
BNILDI_22390: ybbO - NADP(+)-dependent aldehyde reductase, at 4,503,903 to 4,504,673
ybbO
BNILDI_22395: cnoX - chaperedoxin, at 4,504,734 to 4,505,588
cnoX
Position (kb) 4503
4504 Strain fitness (log2 ratio) -1
0
1 at 4502.286 kb on - strand, within ybbP at 4502.550 kb on + strand at 4502.550 kb on + strand at 4502.551 kb on - strand at 4502.551 kb on - strand at 4502.551 kb on - strand at 4502.551 kb on - strand at 4502.551 kb on - strand at 4502.631 kb on - strand at 4503.055 kb on + strand, within ybbA at 4503.055 kb on + strand, within ybbA at 4503.055 kb on + strand, within ybbA at 4503.055 kb on + strand, within ybbA at 4503.055 kb on + strand, within ybbA at 4503.055 kb on + strand, within ybbA at 4503.056 kb on - strand, within ybbA at 4503.056 kb on - strand, within ybbA at 4503.056 kb on - strand, within ybbA at 4503.056 kb on - strand, within ybbA at 4503.412 kb on + strand, within tesA at 4503.412 kb on + strand, within tesA at 4503.412 kb on + strand, within tesA at 4503.413 kb on - strand, within tesA at 4503.413 kb on - strand, within tesA at 4503.413 kb on - strand, within tesA at 4503.413 kb on - strand, within tesA at 4503.435 kb on + strand, within tesA at 4503.435 kb on + strand, within tesA at 4503.637 kb on - strand, within tesA at 4503.645 kb on + strand, within tesA at 4503.646 kb on - strand, within tesA at 4503.662 kb on + strand, within tesA at 4503.662 kb on + strand, within tesA at 4503.663 kb on - strand, within tesA at 4503.677 kb on - strand, within tesA at 4503.791 kb on - strand, within tesA at 4503.820 kb on + strand at 4503.873 kb on - strand at 4503.897 kb on - strand at 4503.919 kb on + strand at 4503.967 kb on + strand at 4504.026 kb on - strand, within ybbO at 4504.139 kb on + strand, within ybbO at 4504.140 kb on - strand, within ybbO at 4504.161 kb on + strand, within ybbO at 4504.161 kb on + strand, within ybbO at 4504.161 kb on + strand, within ybbO at 4504.161 kb on + strand, within ybbO at 4504.161 kb on + strand, within ybbO at 4504.161 kb on + strand, within ybbO at 4504.162 kb on - strand, within ybbO at 4504.162 kb on - strand, within ybbO at 4504.162 kb on - strand, within ybbO at 4504.162 kb on - strand, within ybbO at 4504.162 kb on - strand, within ybbO at 4504.162 kb on - strand, within ybbO at 4504.283 kb on + strand, within ybbO at 4504.339 kb on - strand, within ybbO at 4504.353 kb on + strand, within ybbO at 4504.409 kb on + strand, within ybbO at 4504.563 kb on - strand, within ybbO at 4504.748 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MPec2 remove 4,502,286 - ybbP BNILDI_22375 0.87 -0.2 4,502,550 + -0.2 4,502,550 + -0.3 4,502,551 - -1.1 4,502,551 - -0.1 4,502,551 - -0.1 4,502,551 - +0.3 4,502,551 - +0.3 4,502,631 - -0.3 4,503,055 + ybbA BNILDI_22380 0.67 -0.3 4,503,055 + ybbA BNILDI_22380 0.67 +0.0 4,503,055 + ybbA BNILDI_22380 0.67 +0.0 4,503,055 + ybbA BNILDI_22380 0.67 -0.3 4,503,055 + ybbA BNILDI_22380 0.67 -0.4 4,503,055 + ybbA BNILDI_22380 0.67 -0.8 4,503,056 - ybbA BNILDI_22380 0.67 +0.5 4,503,056 - ybbA BNILDI_22380 0.67 -0.9 4,503,056 - ybbA BNILDI_22380 0.67 -0.3 4,503,056 - ybbA BNILDI_22380 0.67 +0.0 4,503,412 + tesA BNILDI_22385 0.22 -0.6 4,503,412 + tesA BNILDI_22385 0.22 -0.2 4,503,412 + tesA BNILDI_22385 0.22 +0.2 4,503,413 - tesA BNILDI_22385 0.22 +0.1 4,503,413 - tesA BNILDI_22385 0.22 -0.7 4,503,413 - tesA BNILDI_22385 0.22 +0.1 4,503,413 - tesA BNILDI_22385 0.22 +0.4 4,503,435 + tesA BNILDI_22385 0.26 +0.7 4,503,435 + tesA BNILDI_22385 0.26 -0.2 4,503,637 - tesA BNILDI_22385 0.60 -0.4 4,503,645 + tesA BNILDI_22385 0.61 +0.5 4,503,646 - tesA BNILDI_22385 0.61 +0.6 4,503,662 + tesA BNILDI_22385 0.64 -1.6 4,503,662 + tesA BNILDI_22385 0.64 -0.5 4,503,663 - tesA BNILDI_22385 0.64 -1.3 4,503,677 - tesA BNILDI_22385 0.67 -1.4 4,503,791 - tesA BNILDI_22385 0.86 -0.1 4,503,820 + +0.9 4,503,873 - +1.1 4,503,897 - +0.4 4,503,919 + -0.7 4,503,967 + -0.1 4,504,026 - ybbO BNILDI_22390 0.16 +0.4 4,504,139 + ybbO BNILDI_22390 0.31 -0.2 4,504,140 - ybbO BNILDI_22390 0.31 +0.0 4,504,161 + ybbO BNILDI_22390 0.33 +1.2 4,504,161 + ybbO BNILDI_22390 0.33 +0.1 4,504,161 + ybbO BNILDI_22390 0.33 -0.3 4,504,161 + ybbO BNILDI_22390 0.33 +0.3 4,504,161 + ybbO BNILDI_22390 0.33 +1.3 4,504,161 + ybbO BNILDI_22390 0.33 -0.2 4,504,162 - ybbO BNILDI_22390 0.34 -0.8 4,504,162 - ybbO BNILDI_22390 0.34 -0.5 4,504,162 - ybbO BNILDI_22390 0.34 -1.1 4,504,162 - ybbO BNILDI_22390 0.34 +0.4 4,504,162 - ybbO BNILDI_22390 0.34 +0.1 4,504,162 - ybbO BNILDI_22390 0.34 +0.6 4,504,283 + ybbO BNILDI_22390 0.49 -1.3 4,504,339 - ybbO BNILDI_22390 0.57 +1.3 4,504,353 + ybbO BNILDI_22390 0.58 -0.4 4,504,409 + ybbO BNILDI_22390 0.66 -0.2 4,504,563 - ybbO BNILDI_22390 0.86 +0.3 4,504,748 + +0.9
Or see this region's nucleotide sequence