Experiment: MPec2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt allC and allE are separated by 10 nucleotides allE and glxK are separated by 128 nucleotides
BNILDI_22290: allC - allantoate deiminase, at 4,479,008 to 4,480,243
allC
BNILDI_22295: allE - (S)-ureidoglycine aminohydrolase, at 4,480,254 to 4,481,039
allE
BNILDI_22305: glxK - glycerate 3-kinase, at 4,481,168 to 4,482,313
glxK
Position (kb) 4480
4481
4482 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4479.356 kb on - strand, within allC at 4479.404 kb on + strand, within allC at 4479.557 kb on - strand, within allC at 4479.956 kb on - strand, within allC at 4479.969 kb on + strand, within allC at 4480.001 kb on - strand, within allC at 4480.252 kb on - strand at 4480.264 kb on + strand at 4480.264 kb on + strand at 4480.265 kb on - strand at 4480.527 kb on - strand, within allE at 4480.575 kb on + strand, within allE at 4480.647 kb on + strand, within allE at 4480.647 kb on + strand, within allE at 4480.648 kb on - strand, within allE at 4480.649 kb on + strand, within allE at 4480.649 kb on + strand, within allE at 4480.650 kb on - strand, within allE at 4480.660 kb on - strand, within allE at 4480.660 kb on - strand, within allE at 4480.834 kb on - strand, within allE at 4480.932 kb on + strand, within allE at 4481.001 kb on - strand at 4481.070 kb on - strand at 4481.094 kb on - strand at 4481.195 kb on - strand at 4481.209 kb on + strand at 4481.339 kb on + strand, within glxK at 4481.369 kb on - strand, within glxK at 4481.518 kb on + strand, within glxK at 4481.596 kb on + strand, within glxK at 4481.597 kb on - strand, within glxK at 4481.615 kb on + strand, within glxK at 4481.629 kb on - strand, within glxK at 4481.744 kb on + strand, within glxK at 4481.745 kb on - strand, within glxK at 4481.816 kb on - strand, within glxK at 4481.927 kb on - strand, within glxK at 4481.929 kb on + strand, within glxK at 4481.964 kb on - strand, within glxK at 4482.001 kb on + strand, within glxK
Per-strain Table
Position Strand Gene LocusTag Fraction MPec2 remove 4,479,356 - allC BNILDI_22290 0.28 +0.1 4,479,404 + allC BNILDI_22290 0.32 -0.7 4,479,557 - allC BNILDI_22290 0.44 +0.7 4,479,956 - allC BNILDI_22290 0.77 +1.3 4,479,969 + allC BNILDI_22290 0.78 +0.0 4,480,001 - allC BNILDI_22290 0.80 -0.5 4,480,252 - +0.9 4,480,264 + -0.8 4,480,264 + +0.3 4,480,265 - +0.1 4,480,527 - allE BNILDI_22295 0.35 +0.8 4,480,575 + allE BNILDI_22295 0.41 -1.4 4,480,647 + allE BNILDI_22295 0.50 +3.8 4,480,647 + allE BNILDI_22295 0.50 -1.7 4,480,648 - allE BNILDI_22295 0.50 -0.4 4,480,649 + allE BNILDI_22295 0.50 -0.4 4,480,649 + allE BNILDI_22295 0.50 +1.5 4,480,650 - allE BNILDI_22295 0.50 -0.6 4,480,660 - allE BNILDI_22295 0.52 +0.1 4,480,660 - allE BNILDI_22295 0.52 -0.2 4,480,834 - allE BNILDI_22295 0.74 -1.9 4,480,932 + allE BNILDI_22295 0.86 +0.3 4,481,001 - -0.1 4,481,070 - -0.7 4,481,094 - -0.6 4,481,195 - +1.3 4,481,209 + -0.0 4,481,339 + glxK BNILDI_22305 0.15 +0.4 4,481,369 - glxK BNILDI_22305 0.18 +2.4 4,481,518 + glxK BNILDI_22305 0.31 -0.0 4,481,596 + glxK BNILDI_22305 0.37 -0.1 4,481,597 - glxK BNILDI_22305 0.37 +0.0 4,481,615 + glxK BNILDI_22305 0.39 +0.9 4,481,629 - glxK BNILDI_22305 0.40 +1.2 4,481,744 + glxK BNILDI_22305 0.50 -0.1 4,481,745 - glxK BNILDI_22305 0.50 +0.5 4,481,816 - glxK BNILDI_22305 0.57 -0.2 4,481,927 - glxK BNILDI_22305 0.66 +0.3 4,481,929 + glxK BNILDI_22305 0.66 -0.3 4,481,964 - glxK BNILDI_22305 0.69 +0.4 4,482,001 + glxK BNILDI_22305 0.73 -0.5
Or see this region's nucleotide sequence