Strain Fitness in Escherichia coli ECRC62 around BNILDI_17845

Experiment: MPec2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MPec2
3,586,578	+	ydcF	BNILDI_17840	0.17	-1.1
3,586,640	-	ydcF	BNILDI_17840	0.24	+0.9
3,586,667	-	ydcF	BNILDI_17840	0.28	+1.1
3,586,714	+	ydcF	BNILDI_17840	0.34	-0.8
3,586,838	-	ydcF	BNILDI_17840	0.49	-0.4
3,587,079	+	ydcF	BNILDI_17840	0.79	-1.9
3,587,080	-	ydcF	BNILDI_17840	0.79	-1.8
3,587,194	+				+0.3
3,587,195	-				-1.5
3,587,203	+				+1.5
3,587,203	+				-0.7
3,587,204	-				+0.2
3,587,204	-				-0.4
3,587,205	+				-0.2
3,587,205	+				-0.9
3,587,205	+				+0.2
3,587,284	+				+0.2
3,587,287	+				+0.1
3,587,323	+				-0.5
3,587,324	-				-0.4
3,587,324	-				+0.2
3,587,324	-				-0.2
3,587,357	-				+0.8
3,587,376	+				+0.9
3,587,381	-				-1.8
3,587,387	+				-0.9
3,587,449	+				-0.4
3,587,455	+				-0.9
3,587,548	+				+0.9
3,587,596	-				-0.5
3,587,616	-				-0.4
3,587,841	-				+0.2
3,588,064	+	hrpA	BNILDI_17845	0.14	+0.0
3,588,083	-	hrpA	BNILDI_17845	0.15	+3.2
3,588,126	+	hrpA	BNILDI_17845	0.16	-0.1
3,588,312	+	hrpA	BNILDI_17845	0.20	-0.1
3,588,333	+	hrpA	BNILDI_17845	0.21	+0.1
3,588,364	+	hrpA	BNILDI_17845	0.22	+0.1
3,588,365	-	hrpA	BNILDI_17845	0.22	+0.6
3,588,368	+	hrpA	BNILDI_17845	0.22	+0.3
3,588,368	+	hrpA	BNILDI_17845	0.22	-0.0
3,588,369	-	hrpA	BNILDI_17845	0.22	-1.3
3,588,369	-	hrpA	BNILDI_17845	0.22	+0.8
3,588,471	-	hrpA	BNILDI_17845	0.24	-1.2
3,588,632	+	hrpA	BNILDI_17845	0.29	-1.0
3,588,698	-	hrpA	BNILDI_17845	0.30	-0.3
3,588,770	-	hrpA	BNILDI_17845	0.32	-0.2
3,588,787	+	hrpA	BNILDI_17845	0.33	+0.1
3,588,788	-	hrpA	BNILDI_17845	0.33	-0.6
3,588,791	+	hrpA	BNILDI_17845	0.33	-0.4
3,588,791	+	hrpA	BNILDI_17845	0.33	-1.2
3,589,171	+	hrpA	BNILDI_17845	0.42	-0.4
3,589,474	+	hrpA	BNILDI_17845	0.50	-1.4
3,589,487	-	hrpA	BNILDI_17845	0.50	+0.2
3,589,489	-	hrpA	BNILDI_17845	0.51	-0.5
3,589,529	+	hrpA	BNILDI_17845	0.52	-0.4
3,589,530	-	hrpA	BNILDI_17845	0.52	+0.6
3,589,627	-	hrpA	BNILDI_17845	0.54	-0.3
3,589,627	-	hrpA	BNILDI_17845	0.54	-0.0
3,589,631	-	hrpA	BNILDI_17845	0.54	-1.1
3,589,631	-	hrpA	BNILDI_17845	0.54	+0.4
3,589,631	-	hrpA	BNILDI_17845	0.54	-1.1
3,589,656	+	hrpA	BNILDI_17845	0.55	-0.1
3,590,194	+	hrpA	BNILDI_17845	0.69	-1.9
3,590,195	-	hrpA	BNILDI_17845	0.69	-1.1
3,590,308	+	hrpA	BNILDI_17845	0.72	-0.2
3,590,308	+	hrpA	BNILDI_17845	0.72	+0.6
3,590,309	-	hrpA	BNILDI_17845	0.72	+2.0
3,590,334	+	hrpA	BNILDI_17845	0.72	-1.1
3,590,335	-	hrpA	BNILDI_17845	0.72	+0.1
3,590,335	-	hrpA	BNILDI_17845	0.72	+0.2
3,590,335	-	hrpA	BNILDI_17845	0.72	+0.3
3,590,339	-	hrpA	BNILDI_17845	0.72	-0.6
3,590,480	+	hrpA	BNILDI_17845	0.76	-0.0
3,590,481	-	hrpA	BNILDI_17845	0.76	-0.5
3,590,530	+	hrpA	BNILDI_17845	0.77	-0.3
3,590,531	-	hrpA	BNILDI_17845	0.77	+0.2
3,590,658	+	hrpA	BNILDI_17845	0.81	+0.9
3,590,692	+	hrpA	BNILDI_17845	0.81	+0.6
3,590,751	-	hrpA	BNILDI_17845	0.83	-0.5
3,590,784	+	hrpA	BNILDI_17845	0.84	-0.1
3,590,784	+	hrpA	BNILDI_17845	0.84	-0.9
3,590,847	+	hrpA	BNILDI_17845	0.85	+0.5
3,590,847	+	hrpA	BNILDI_17845	0.85	-0.4
3,590,996	-	hrpA	BNILDI_17845	0.89	+0.6
3,591,056	-				-0.1
3,591,201	+				+0.3
3,591,201	+				+0.1
3,591,205	+				-0.2
3,591,419	-				-0.7
3,591,465	+				+1.6
3,591,466	-				-0.7
3,591,470	-				-0.1
3,591,471	+				-1.1
3,591,607	+				-0.9
3,591,630	-				+0.3
3,591,632	+				+0.6
3,591,633	-				-0.1
3,591,662	-				+0.1
3,591,662	-				+2.2
3,591,908	-	azoR	BNILDI_17850	0.48	-1.4
3,591,908	-	azoR	BNILDI_17850	0.48	-1.4
3,591,910	-	azoR	BNILDI_17850	0.48	+0.2
3,592,029	+	azoR	BNILDI_17850	0.68	+0.6
3,592,029	+	azoR	BNILDI_17850	0.68	-2.6
3,592,030	-	azoR	BNILDI_17850	0.68	-0.6
3,592,084	+	azoR	BNILDI_17850	0.77	+0.3
3,592,153	+	azoR	BNILDI_17850	0.88	-0.1
3,592,250	+				+0.1
3,592,277	-				-0.2
3,592,320	-				-0.7
3,592,376	+				+1.6
3,592,377	-				-1.2
3,592,392	+				+0.2
3,592,393	-				-0.3