Experiment: MPec2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yeeW and cbtA overlap by 4 nucleotides cbtA and cbtA are separated by 88 nucleotides cbtA and yeeT are separated by 73 nucleotides yeeT and tnp-ISL3 are separated by 352 nucleotides
BNILDI_14830: yeeW - Protein YeeW, at 2,992,773 to 2,992,967
yeeW
BNILDI_14835: cbtA - type IV toxin-antitoxin system toxin CbtA, at 2,992,964 to 2,993,338
cbtA
BNILDI_14840: cbtA - type IV toxin-antitoxin system toxin CbtA, at 2,993,427 to 2,993,795
cbtA
BNILDI_14845: yeeT - Uncharacterized protein YeeT, at 2,993,869 to 2,994,090
yeeT
BNILDI_14850: tnp-ISL3 - ISL3 family transposase, at 2,994,443 to 2,995,822
tnp-ISL3
Position (kb)
2993
2994
2995 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2992.936 kb on - strand, within yeeW at 2992.999 kb on + strand at 2993.000 kb on - strand at 2993.000 kb on - strand at 2993.013 kb on + strand, within cbtA at 2993.014 kb on - strand, within cbtA at 2993.014 kb on - strand, within cbtA at 2993.065 kb on + strand, within cbtA at 2993.072 kb on + strand, within cbtA at 2993.076 kb on - strand, within cbtA at 2993.239 kb on - strand, within cbtA at 2993.367 kb on - strand at 2993.518 kb on + strand, within cbtA at 2993.518 kb on + strand, within cbtA at 2993.977 kb on - strand, within yeeT at 2993.978 kb on + strand, within yeeT at 2993.978 kb on + strand, within yeeT at 2994.263 kb on + strand at 2994.466 kb on + strand at 2994.466 kb on + strand at 2994.477 kb on + strand at 2994.478 kb on - strand at 2994.484 kb on - strand at 2994.515 kb on - strand at 2994.517 kb on + strand at 2994.518 kb on - strand at 2994.634 kb on - strand, within tnp-ISL3 at 2994.634 kb on - strand, within tnp-ISL3 at 2994.634 kb on - strand, within tnp-ISL3 at 2994.654 kb on + strand, within tnp-ISL3 at 2994.664 kb on - strand, within tnp-ISL3 at 2994.798 kb on + strand, within tnp-ISL3 at 2994.799 kb on - strand, within tnp-ISL3 at 2994.801 kb on + strand, within tnp-ISL3 at 2994.862 kb on + strand, within tnp-ISL3 at 2994.970 kb on - strand, within tnp-ISL3 at 2994.972 kb on + strand, within tnp-ISL3 at 2995.062 kb on + strand, within tnp-ISL3
Per-strain Table
Position Strand Gene LocusTag Fraction MPec2 remove 2,992,936 - yeeW BNILDI_14830 0.84 -0.4 2,992,999 + -0.0 2,993,000 - +0.1 2,993,000 - +2.0 2,993,013 + cbtA BNILDI_14835 0.13 +0.0 2,993,014 - cbtA BNILDI_14835 0.13 -0.6 2,993,014 - cbtA BNILDI_14835 0.13 +0.4 2,993,065 + cbtA BNILDI_14835 0.27 -0.8 2,993,072 + cbtA BNILDI_14835 0.29 +1.4 2,993,076 - cbtA BNILDI_14835 0.30 +0.4 2,993,239 - cbtA BNILDI_14835 0.73 +0.1 2,993,367 - +0.2 2,993,518 + cbtA BNILDI_14840 0.25 +3.3 2,993,518 + cbtA BNILDI_14840 0.25 -0.5 2,993,977 - yeeT BNILDI_14845 0.49 -0.5 2,993,978 + yeeT BNILDI_14845 0.49 -1.0 2,993,978 + yeeT BNILDI_14845 0.49 -0.6 2,994,263 + -0.2 2,994,466 + -0.1 2,994,466 + +0.7 2,994,477 + -0.0 2,994,478 - -0.2 2,994,484 - +2.5 2,994,515 - -1.1 2,994,517 + -0.4 2,994,518 - +1.6 2,994,634 - tnp-ISL3 BNILDI_14850 0.14 +1.3 2,994,634 - tnp-ISL3 BNILDI_14850 0.14 -0.3 2,994,634 - tnp-ISL3 BNILDI_14850 0.14 +0.5 2,994,654 + tnp-ISL3 BNILDI_14850 0.15 -1.1 2,994,664 - tnp-ISL3 BNILDI_14850 0.16 +0.7 2,994,798 + tnp-ISL3 BNILDI_14850 0.26 +0.0 2,994,799 - tnp-ISL3 BNILDI_14850 0.26 +1.5 2,994,801 + tnp-ISL3 BNILDI_14850 0.26 -0.4 2,994,862 + tnp-ISL3 BNILDI_14850 0.30 -1.2 2,994,970 - tnp-ISL3 BNILDI_14850 0.38 -0.5 2,994,972 + tnp-ISL3 BNILDI_14850 0.38 -0.5 2,995,062 + tnp-ISL3 BNILDI_14850 0.45 -0.8
Or see this region's nucleotide sequence