Strain Fitness in Escherichia coli ECRC62 around BNILDI_11420

Experiment: MPec2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBNILDI_11410 and BNILDI_11415 overlap by 32 nucleotidesBNILDI_11415 and BNILDI_11420 are separated by 266 nucleotidesBNILDI_11420 and BNILDI_11425 are separated by 315 nucleotidesBNILDI_11425 and BNILDI_11430 overlap by 26 nucleotides BNILDI_11410: BNILDI_11410 - relaxase, at 2,298,087 to 2,299,307 _11410 BNILDI_11415: BNILDI_11415 - hypothetical protein, at 2,299,276 to 2,299,704 _11415 BNILDI_11420: BNILDI_11420 - DUF2157 domain-containing protein, at 2,299,971 to 2,300,717 _11420 BNILDI_11425: BNILDI_11425 - hypothetical protein, at 2,301,033 to 2,301,191 _11425 BNILDI_11430: BNILDI_11430 - hypothetical protein, at 2,301,166 to 2,301,726 _11430 Position (kb) 2299 2300 2301Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2298.993 kb on + strand, within BNILDI_11410at 2299.000 kb on + strand, within BNILDI_11410at 2299.001 kb on - strand, within BNILDI_11410at 2299.040 kb on + strand, within BNILDI_11410at 2299.040 kb on + strand, within BNILDI_11410at 2299.040 kb on + strand, within BNILDI_11410at 2299.042 kb on + strand, within BNILDI_11410at 2299.042 kb on + strand, within BNILDI_11410at 2299.043 kb on - strand, within BNILDI_11410at 2299.043 kb on - strand, within BNILDI_11410at 2299.196 kb on + strandat 2299.196 kb on + strandat 2299.226 kb on + strandat 2299.227 kb on - strandat 2299.227 kb on - strandat 2299.227 kb on - strandat 2299.307 kb on + strandat 2299.321 kb on + strand, within BNILDI_11415at 2299.387 kb on - strand, within BNILDI_11415at 2299.402 kb on - strand, within BNILDI_11415at 2299.413 kb on + strand, within BNILDI_11415at 2299.414 kb on - strand, within BNILDI_11415at 2299.420 kb on + strand, within BNILDI_11415at 2299.420 kb on + strand, within BNILDI_11415at 2299.420 kb on + strand, within BNILDI_11415at 2299.420 kb on + strand, within BNILDI_11415at 2300.373 kb on + strand, within BNILDI_11420at 2300.374 kb on - strand, within BNILDI_11420at 2300.415 kb on - strand, within BNILDI_11420at 2300.589 kb on - strand, within BNILDI_11420at 2300.967 kb on + strandat 2301.344 kb on - strand, within BNILDI_11430at 2301.344 kb on - strand, within BNILDI_11430at 2301.405 kb on + strand, within BNILDI_11430

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Per-strain Table

Position Strand Gene LocusTag Fraction MPec2
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2,298,993 + BNILDI_11410 0.74 +0.3
2,299,000 + BNILDI_11410 0.75 -0.9
2,299,001 - BNILDI_11410 0.75 -0.1
2,299,040 + BNILDI_11410 0.78 -0.9
2,299,040 + BNILDI_11410 0.78 -0.0
2,299,040 + BNILDI_11410 0.78 -1.0
2,299,042 + BNILDI_11410 0.78 -1.3
2,299,042 + BNILDI_11410 0.78 +0.7
2,299,043 - BNILDI_11410 0.78 -0.1
2,299,043 - BNILDI_11410 0.78 -0.5
2,299,196 + -2.1
2,299,196 + -0.3
2,299,226 + +0.9
2,299,227 - -0.0
2,299,227 - +0.5
2,299,227 - +0.7
2,299,307 + -0.8
2,299,321 + BNILDI_11415 0.10 +1.2
2,299,387 - BNILDI_11415 0.26 +2.9
2,299,402 - BNILDI_11415 0.29 -0.3
2,299,413 + BNILDI_11415 0.32 +1.0
2,299,414 - BNILDI_11415 0.32 +0.6
2,299,420 + BNILDI_11415 0.34 -0.9
2,299,420 + BNILDI_11415 0.34 -0.1
2,299,420 + BNILDI_11415 0.34 -0.0
2,299,420 + BNILDI_11415 0.34 +0.6
2,300,373 + BNILDI_11420 0.54 -0.5
2,300,374 - BNILDI_11420 0.54 -0.2
2,300,415 - BNILDI_11420 0.59 +0.1
2,300,589 - BNILDI_11420 0.83 +0.3
2,300,967 + -0.3
2,301,344 - BNILDI_11430 0.32 -0.5
2,301,344 - BNILDI_11430 0.32 +1.2
2,301,405 + BNILDI_11430 0.43 +0.9

Or see this region's nucleotide sequence