Experiment: MPec2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_09535 and yprA overlap by 1 nucleotides yprA and hepA are separated by 223 nucleotides
BNILDI_09535: BNILDI_09535 - STY4851/ECs_5259 family protein, at 1,903,011 to 1,906,370
_09535
BNILDI_09540: yprA - DEAD/DEAH box helicase, at 1,906,370 to 1,912,684
yprA
BNILDI_09545: hepA - helicase, at 1,912,908 to 1,915,766
hepA
Position (kb) 1906
1907
1908
1909
1910
1911
1912
1913 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1905.385 kb on + strand, within BNILDI_09535 at 1905.911 kb on + strand, within BNILDI_09535 at 1906.139 kb on + strand at 1906.360 kb on + strand at 1906.768 kb on + strand at 1906.889 kb on - strand at 1906.915 kb on + strand at 1907.048 kb on + strand, within yprA at 1907.049 kb on - strand, within yprA at 1907.051 kb on - strand, within yprA at 1907.104 kb on - strand, within yprA at 1907.108 kb on + strand, within yprA at 1907.109 kb on - strand, within yprA at 1907.132 kb on - strand, within yprA at 1907.135 kb on + strand, within yprA at 1907.136 kb on - strand, within yprA at 1907.136 kb on - strand, within yprA at 1907.136 kb on - strand, within yprA at 1907.136 kb on - strand, within yprA at 1907.138 kb on - strand, within yprA at 1907.248 kb on + strand, within yprA at 1907.275 kb on + strand, within yprA at 1907.275 kb on + strand, within yprA at 1907.275 kb on + strand, within yprA at 1907.511 kb on + strand, within yprA at 1907.558 kb on - strand, within yprA at 1907.561 kb on - strand, within yprA at 1907.626 kb on + strand, within yprA at 1907.634 kb on + strand, within yprA at 1907.634 kb on + strand, within yprA at 1907.635 kb on - strand, within yprA at 1907.638 kb on + strand, within yprA at 1907.638 kb on + strand, within yprA at 1907.639 kb on - strand, within yprA at 1907.639 kb on - strand, within yprA at 1907.639 kb on - strand, within yprA at 1907.639 kb on - strand, within yprA at 1907.650 kb on + strand, within yprA at 1907.702 kb on - strand, within yprA at 1907.746 kb on - strand, within yprA at 1907.746 kb on - strand, within yprA at 1907.746 kb on - strand, within yprA at 1907.800 kb on - strand, within yprA at 1907.825 kb on + strand, within yprA at 1907.962 kb on + strand, within yprA at 1907.963 kb on - strand, within yprA at 1907.963 kb on - strand, within yprA at 1908.110 kb on - strand, within yprA at 1908.218 kb on - strand, within yprA at 1908.264 kb on + strand, within yprA at 1908.274 kb on + strand, within yprA at 1908.275 kb on - strand, within yprA at 1908.340 kb on - strand, within yprA at 1908.340 kb on - strand, within yprA at 1908.444 kb on + strand, within yprA at 1908.454 kb on + strand, within yprA at 1908.455 kb on - strand, within yprA at 1908.585 kb on + strand, within yprA at 1908.615 kb on + strand, within yprA at 1908.615 kb on + strand, within yprA at 1908.615 kb on + strand, within yprA at 1908.616 kb on - strand, within yprA at 1908.748 kb on + strand, within yprA at 1908.752 kb on - strand, within yprA at 1908.939 kb on + strand, within yprA at 1908.940 kb on - strand, within yprA at 1908.949 kb on + strand, within yprA at 1908.966 kb on + strand, within yprA at 1909.005 kb on - strand, within yprA at 1909.117 kb on + strand, within yprA at 1909.129 kb on + strand, within yprA at 1909.130 kb on - strand, within yprA at 1909.137 kb on + strand, within yprA at 1909.138 kb on - strand, within yprA at 1909.138 kb on - strand, within yprA at 1909.138 kb on - strand, within yprA at 1909.158 kb on + strand, within yprA at 1909.159 kb on - strand, within yprA at 1909.200 kb on + strand, within yprA at 1909.200 kb on + strand, within yprA at 1909.200 kb on + strand, within yprA at 1909.237 kb on - strand, within yprA at 1909.321 kb on + strand, within yprA at 1909.355 kb on + strand, within yprA at 1909.355 kb on + strand, within yprA at 1909.431 kb on + strand, within yprA at 1909.534 kb on - strand, within yprA at 1909.540 kb on + strand, within yprA at 1909.570 kb on + strand, within yprA at 1909.643 kb on - strand, within yprA at 1909.708 kb on + strand, within yprA at 1909.709 kb on - strand, within yprA at 1909.810 kb on + strand, within yprA at 1909.811 kb on - strand, within yprA at 1909.815 kb on + strand, within yprA at 1909.815 kb on + strand, within yprA at 1909.820 kb on - strand, within yprA at 1909.820 kb on - strand, within yprA at 1909.820 kb on - strand, within yprA at 1909.912 kb on + strand, within yprA at 1909.912 kb on + strand, within yprA at 1909.912 kb on + strand, within yprA at 1909.912 kb on + strand, within yprA at 1909.912 kb on + strand, within yprA at 1909.913 kb on - strand, within yprA at 1910.050 kb on - strand, within yprA at 1910.083 kb on + strand, within yprA at 1910.301 kb on - strand, within yprA at 1910.434 kb on + strand, within yprA at 1910.435 kb on - strand, within yprA at 1910.511 kb on - strand, within yprA at 1910.533 kb on - strand, within yprA at 1910.548 kb on - strand, within yprA at 1910.567 kb on - strand, within yprA at 1910.581 kb on - strand, within yprA at 1910.581 kb on - strand, within yprA at 1910.617 kb on + strand, within yprA at 1910.641 kb on + strand, within yprA at 1910.665 kb on + strand, within yprA at 1910.666 kb on - strand, within yprA at 1910.706 kb on + strand, within yprA at 1910.706 kb on + strand, within yprA at 1910.707 kb on - strand, within yprA at 1910.707 kb on - strand, within yprA at 1910.733 kb on + strand, within yprA at 1910.733 kb on + strand, within yprA at 1910.784 kb on + strand, within yprA at 1910.785 kb on - strand, within yprA at 1910.787 kb on - strand, within yprA at 1910.989 kb on + strand, within yprA at 1911.026 kb on - strand, within yprA at 1911.032 kb on + strand, within yprA at 1911.033 kb on - strand, within yprA at 1911.033 kb on - strand, within yprA at 1911.097 kb on + strand, within yprA at 1911.133 kb on + strand, within yprA at 1911.160 kb on + strand, within yprA at 1911.161 kb on - strand, within yprA at 1911.320 kb on + strand, within yprA at 1911.328 kb on + strand, within yprA at 1911.347 kb on + strand, within yprA at 1911.385 kb on + strand, within yprA at 1911.385 kb on + strand, within yprA at 1911.385 kb on + strand, within yprA at 1911.385 kb on + strand, within yprA at 1911.390 kb on - strand, within yprA at 1911.449 kb on + strand, within yprA at 1911.449 kb on + strand, within yprA at 1911.464 kb on + strand, within yprA at 1911.464 kb on + strand, within yprA at 1911.465 kb on - strand, within yprA at 1911.506 kb on - strand, within yprA at 1911.513 kb on + strand, within yprA at 1911.514 kb on - strand, within yprA at 1911.514 kb on - strand, within yprA at 1911.514 kb on - strand, within yprA at 1911.546 kb on - strand, within yprA at 1911.552 kb on - strand, within yprA at 1911.580 kb on + strand, within yprA at 1911.595 kb on - strand, within yprA at 1911.598 kb on + strand, within yprA at 1911.627 kb on - strand, within yprA at 1911.695 kb on - strand, within yprA at 1911.766 kb on - strand, within yprA at 1911.822 kb on + strand, within yprA at 1911.951 kb on + strand, within yprA at 1911.989 kb on - strand, within yprA at 1911.989 kb on - strand, within yprA at 1912.026 kb on + strand, within yprA at 1912.027 kb on - strand, within yprA at 1912.189 kb on - strand at 1912.202 kb on + strand at 1912.214 kb on + strand at 1912.219 kb on + strand at 1912.220 kb on - strand at 1912.222 kb on + strand at 1912.245 kb on + strand at 1912.325 kb on + strand at 1912.325 kb on + strand at 1912.401 kb on + strand at 1912.402 kb on - strand at 1912.444 kb on + strand at 1912.445 kb on - strand at 1912.471 kb on + strand at 1912.472 kb on - strand at 1912.523 kb on + strand at 1912.524 kb on - strand at 1912.524 kb on - strand at 1912.547 kb on - strand at 1912.661 kb on - strand at 1912.667 kb on + strand at 1912.667 kb on + strand at 1912.667 kb on + strand at 1912.668 kb on - strand at 1912.668 kb on - strand at 1912.668 kb on - strand at 1912.668 kb on - strand at 1912.682 kb on + strand at 1912.924 kb on - strand at 1913.002 kb on - strand at 1913.022 kb on - strand at 1913.081 kb on - strand at 1913.151 kb on + strand at 1913.152 kb on - strand at 1913.152 kb on - strand at 1913.152 kb on - strand at 1913.154 kb on - strand at 1913.193 kb on - strand at 1913.534 kb on + strand, within hepA at 1913.535 kb on - strand, within hepA at 1913.604 kb on - strand, within hepA at 1913.604 kb on - strand, within hepA at 1913.604 kb on - strand, within hepA at 1913.660 kb on + strand, within hepA
Per-strain Table
Position Strand Gene LocusTag Fraction MPec2 remove 1,905,385 + BNILDI_09535 0.71 +0.1 1,905,911 + BNILDI_09535 0.86 -1.1 1,906,139 + +0.6 1,906,360 + -0.3 1,906,768 + +0.4 1,906,889 - +0.0 1,906,915 + -0.1 1,907,048 + yprA BNILDI_09540 0.11 -0.4 1,907,049 - yprA BNILDI_09540 0.11 -0.8 1,907,051 - yprA BNILDI_09540 0.11 -0.7 1,907,104 - yprA BNILDI_09540 0.12 +1.5 1,907,108 + yprA BNILDI_09540 0.12 +0.9 1,907,109 - yprA BNILDI_09540 0.12 +0.0 1,907,132 - yprA BNILDI_09540 0.12 +0.0 1,907,135 + yprA BNILDI_09540 0.12 +0.9 1,907,136 - yprA BNILDI_09540 0.12 +0.2 1,907,136 - yprA BNILDI_09540 0.12 -1.1 1,907,136 - yprA BNILDI_09540 0.12 -0.5 1,907,136 - yprA BNILDI_09540 0.12 +1.9 1,907,138 - yprA BNILDI_09540 0.12 -0.6 1,907,248 + yprA BNILDI_09540 0.14 +0.9 1,907,275 + yprA BNILDI_09540 0.14 +0.4 1,907,275 + yprA BNILDI_09540 0.14 +2.9 1,907,275 + yprA BNILDI_09540 0.14 -0.9 1,907,511 + yprA BNILDI_09540 0.18 +0.5 1,907,558 - yprA BNILDI_09540 0.19 -0.2 1,907,561 - yprA BNILDI_09540 0.19 +0.9 1,907,626 + yprA BNILDI_09540 0.20 +0.2 1,907,634 + yprA BNILDI_09540 0.20 +0.1 1,907,634 + yprA BNILDI_09540 0.20 +0.4 1,907,635 - yprA BNILDI_09540 0.20 +0.3 1,907,638 + yprA BNILDI_09540 0.20 -0.0 1,907,638 + yprA BNILDI_09540 0.20 -1.3 1,907,639 - yprA BNILDI_09540 0.20 -0.0 1,907,639 - yprA BNILDI_09540 0.20 -0.4 1,907,639 - yprA BNILDI_09540 0.20 -0.6 1,907,639 - yprA BNILDI_09540 0.20 -0.6 1,907,650 + yprA BNILDI_09540 0.20 +1.4 1,907,702 - yprA BNILDI_09540 0.21 -0.2 1,907,746 - yprA BNILDI_09540 0.22 +0.1 1,907,746 - yprA BNILDI_09540 0.22 +1.9 1,907,746 - yprA BNILDI_09540 0.22 -1.1 1,907,800 - yprA BNILDI_09540 0.23 +1.5 1,907,825 + yprA BNILDI_09540 0.23 +0.0 1,907,962 + yprA BNILDI_09540 0.25 +0.9 1,907,963 - yprA BNILDI_09540 0.25 -1.5 1,907,963 - yprA BNILDI_09540 0.25 -0.2 1,908,110 - yprA BNILDI_09540 0.28 +0.2 1,908,218 - yprA BNILDI_09540 0.29 -1.4 1,908,264 + yprA BNILDI_09540 0.30 +1.9 1,908,274 + yprA BNILDI_09540 0.30 -0.4 1,908,275 - yprA BNILDI_09540 0.30 -1.8 1,908,340 - yprA BNILDI_09540 0.31 +0.0 1,908,340 - yprA BNILDI_09540 0.31 -0.0 1,908,444 + yprA BNILDI_09540 0.33 +0.2 1,908,454 + yprA BNILDI_09540 0.33 +0.3 1,908,455 - yprA BNILDI_09540 0.33 -0.1 1,908,585 + yprA BNILDI_09540 0.35 +0.0 1,908,615 + yprA BNILDI_09540 0.36 -0.4 1,908,615 + yprA BNILDI_09540 0.36 +0.0 1,908,615 + yprA BNILDI_09540 0.36 -1.2 1,908,616 - yprA BNILDI_09540 0.36 -0.4 1,908,748 + yprA BNILDI_09540 0.38 -0.9 1,908,752 - yprA BNILDI_09540 0.38 +0.8 1,908,939 + yprA BNILDI_09540 0.41 +0.5 1,908,940 - yprA BNILDI_09540 0.41 +0.3 1,908,949 + yprA BNILDI_09540 0.41 +0.9 1,908,966 + yprA BNILDI_09540 0.41 -0.3 1,909,005 - yprA BNILDI_09540 0.42 -0.8 1,909,117 + yprA BNILDI_09540 0.43 -0.6 1,909,129 + yprA BNILDI_09540 0.44 -0.4 1,909,130 - yprA BNILDI_09540 0.44 +0.1 1,909,137 + yprA BNILDI_09540 0.44 -0.5 1,909,138 - yprA BNILDI_09540 0.44 -0.8 1,909,138 - yprA BNILDI_09540 0.44 +0.1 1,909,138 - yprA BNILDI_09540 0.44 -0.6 1,909,158 + yprA BNILDI_09540 0.44 -0.8 1,909,159 - yprA BNILDI_09540 0.44 +0.9 1,909,200 + yprA BNILDI_09540 0.45 -0.2 1,909,200 + yprA BNILDI_09540 0.45 +0.4 1,909,200 + yprA BNILDI_09540 0.45 +0.2 1,909,237 - yprA BNILDI_09540 0.45 -0.3 1,909,321 + yprA BNILDI_09540 0.47 -0.4 1,909,355 + yprA BNILDI_09540 0.47 -0.1 1,909,355 + yprA BNILDI_09540 0.47 +0.3 1,909,431 + yprA BNILDI_09540 0.48 +0.4 1,909,534 - yprA BNILDI_09540 0.50 -0.1 1,909,540 + yprA BNILDI_09540 0.50 +0.0 1,909,570 + yprA BNILDI_09540 0.51 +0.1 1,909,643 - yprA BNILDI_09540 0.52 +1.1 1,909,708 + yprA BNILDI_09540 0.53 +0.2 1,909,709 - yprA BNILDI_09540 0.53 +1.5 1,909,810 + yprA BNILDI_09540 0.54 -2.4 1,909,811 - yprA BNILDI_09540 0.54 -0.8 1,909,815 + yprA BNILDI_09540 0.55 +0.2 1,909,815 + yprA BNILDI_09540 0.55 -0.4 1,909,820 - yprA BNILDI_09540 0.55 +0.4 1,909,820 - yprA BNILDI_09540 0.55 -0.5 1,909,820 - yprA BNILDI_09540 0.55 +0.4 1,909,912 + yprA BNILDI_09540 0.56 +0.1 1,909,912 + yprA BNILDI_09540 0.56 -1.5 1,909,912 + yprA BNILDI_09540 0.56 -0.5 1,909,912 + yprA BNILDI_09540 0.56 -0.0 1,909,912 + yprA BNILDI_09540 0.56 -0.6 1,909,913 - yprA BNILDI_09540 0.56 -0.6 1,910,050 - yprA BNILDI_09540 0.58 +0.1 1,910,083 + yprA BNILDI_09540 0.59 -0.6 1,910,301 - yprA BNILDI_09540 0.62 -0.0 1,910,434 + yprA BNILDI_09540 0.64 -0.6 1,910,435 - yprA BNILDI_09540 0.64 +0.1 1,910,511 - yprA BNILDI_09540 0.66 +0.5 1,910,533 - yprA BNILDI_09540 0.66 -0.9 1,910,548 - yprA BNILDI_09540 0.66 -1.1 1,910,567 - yprA BNILDI_09540 0.66 +0.4 1,910,581 - yprA BNILDI_09540 0.67 -1.9 1,910,581 - yprA BNILDI_09540 0.67 +0.2 1,910,617 + yprA BNILDI_09540 0.67 +0.4 1,910,641 + yprA BNILDI_09540 0.68 -1.3 1,910,665 + yprA BNILDI_09540 0.68 +0.1 1,910,666 - yprA BNILDI_09540 0.68 +0.4 1,910,706 + yprA BNILDI_09540 0.69 +0.3 1,910,706 + yprA BNILDI_09540 0.69 -0.4 1,910,707 - yprA BNILDI_09540 0.69 -0.6 1,910,707 - yprA BNILDI_09540 0.69 -0.9 1,910,733 + yprA BNILDI_09540 0.69 -0.6 1,910,733 + yprA BNILDI_09540 0.69 -1.6 1,910,784 + yprA BNILDI_09540 0.70 +0.4 1,910,785 - yprA BNILDI_09540 0.70 -0.2 1,910,787 - yprA BNILDI_09540 0.70 -0.2 1,910,989 + yprA BNILDI_09540 0.73 +0.7 1,911,026 - yprA BNILDI_09540 0.74 +0.4 1,911,032 + yprA BNILDI_09540 0.74 -0.9 1,911,033 - yprA BNILDI_09540 0.74 -1.1 1,911,033 - yprA BNILDI_09540 0.74 -0.1 1,911,097 + yprA BNILDI_09540 0.75 -0.2 1,911,133 + yprA BNILDI_09540 0.75 +0.9 1,911,160 + yprA BNILDI_09540 0.76 -0.9 1,911,161 - yprA BNILDI_09540 0.76 -0.3 1,911,320 + yprA BNILDI_09540 0.78 +1.4 1,911,328 + yprA BNILDI_09540 0.79 -0.6 1,911,347 + yprA BNILDI_09540 0.79 -0.5 1,911,385 + yprA BNILDI_09540 0.79 -0.6 1,911,385 + yprA BNILDI_09540 0.79 +0.1 1,911,385 + yprA BNILDI_09540 0.79 +0.1 1,911,385 + yprA BNILDI_09540 0.79 +1.6 1,911,390 - yprA BNILDI_09540 0.79 -2.2 1,911,449 + yprA BNILDI_09540 0.80 -0.0 1,911,449 + yprA BNILDI_09540 0.80 -0.1 1,911,464 + yprA BNILDI_09540 0.81 +0.8 1,911,464 + yprA BNILDI_09540 0.81 -0.1 1,911,465 - yprA BNILDI_09540 0.81 -0.6 1,911,506 - yprA BNILDI_09540 0.81 -1.2 1,911,513 + yprA BNILDI_09540 0.81 +0.1 1,911,514 - yprA BNILDI_09540 0.81 -1.2 1,911,514 - yprA BNILDI_09540 0.81 -0.1 1,911,514 - yprA BNILDI_09540 0.81 +1.9 1,911,546 - yprA BNILDI_09540 0.82 +0.7 1,911,552 - yprA BNILDI_09540 0.82 -0.4 1,911,580 + yprA BNILDI_09540 0.83 +1.4 1,911,595 - yprA BNILDI_09540 0.83 +0.3 1,911,598 + yprA BNILDI_09540 0.83 -0.9 1,911,627 - yprA BNILDI_09540 0.83 +0.9 1,911,695 - yprA BNILDI_09540 0.84 +0.9 1,911,766 - yprA BNILDI_09540 0.85 -0.6 1,911,822 + yprA BNILDI_09540 0.86 -0.1 1,911,951 + yprA BNILDI_09540 0.88 -0.3 1,911,989 - yprA BNILDI_09540 0.89 -0.3 1,911,989 - yprA BNILDI_09540 0.89 -0.3 1,912,026 + yprA BNILDI_09540 0.90 -1.1 1,912,027 - yprA BNILDI_09540 0.90 -0.4 1,912,189 - +0.1 1,912,202 + +0.2 1,912,214 + +1.0 1,912,219 + -0.4 1,912,220 - -0.2 1,912,222 + +0.6 1,912,245 + -0.7 1,912,325 + +0.4 1,912,325 + -0.7 1,912,401 + +1.3 1,912,402 - -0.6 1,912,444 + +1.5 1,912,445 - +0.1 1,912,471 + -0.8 1,912,472 - +1.9 1,912,523 + -0.1 1,912,524 - +0.4 1,912,524 - -0.7 1,912,547 - +0.3 1,912,661 - -0.1 1,912,667 + -0.6 1,912,667 + -1.2 1,912,667 + -0.8 1,912,668 - +1.2 1,912,668 - -1.3 1,912,668 - +0.5 1,912,668 - +1.9 1,912,682 + -0.2 1,912,924 - -0.1 1,913,002 - -0.7 1,913,022 - +0.0 1,913,081 - -0.1 1,913,151 + +1.6 1,913,152 - +0.9 1,913,152 - -1.0 1,913,152 - -0.8 1,913,154 - +0.1 1,913,193 - +0.4 1,913,534 + hepA BNILDI_09545 0.22 +0.1 1,913,535 - hepA BNILDI_09545 0.22 -1.1 1,913,604 - hepA BNILDI_09545 0.24 -0.6 1,913,604 - hepA BNILDI_09545 0.24 +1.5 1,913,604 - hepA BNILDI_09545 0.24 +0.1 1,913,660 + hepA BNILDI_09545 0.26 -0.5
Or see this region's nucleotide sequence