Experiment: MPec2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dgoT and dgoD are separated by 119 nucleotides dgoD and dgoA overlap by 4 nucleotides dgoA and dgoK overlap by 17 nucleotides
BNILDI_04315: dgoT - D-galactonate transporter, at 852,916 to 854,208
dgoT
BNILDI_04320: dgoD - galactonate dehydratase, at 854,328 to 855,476
dgoD
BNILDI_04325: dgoA - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 855,473 to 856,090
dgoA
BNILDI_04330: dgoK - 2-dehydro-3-deoxygalactonokinase, at 856,074 to 856,952
dgoK
Position (kb) 854
855
856 Strain fitness (log2 ratio) -2
-1
0
1
2 at 853.413 kb on - strand, within dgoT at 853.413 kb on - strand, within dgoT at 853.447 kb on - strand, within dgoT at 853.488 kb on + strand, within dgoT at 853.590 kb on - strand, within dgoT at 853.612 kb on - strand, within dgoT at 853.638 kb on - strand, within dgoT at 853.665 kb on + strand, within dgoT at 853.666 kb on - strand, within dgoT at 853.773 kb on + strand, within dgoT at 853.773 kb on + strand, within dgoT at 853.774 kb on - strand, within dgoT at 853.775 kb on + strand, within dgoT at 853.775 kb on + strand, within dgoT at 853.888 kb on + strand, within dgoT at 853.889 kb on - strand, within dgoT at 853.889 kb on - strand, within dgoT at 853.898 kb on - strand, within dgoT at 853.954 kb on - strand, within dgoT at 853.958 kb on + strand, within dgoT at 853.959 kb on - strand, within dgoT at 853.975 kb on + strand, within dgoT at 854.011 kb on + strand, within dgoT at 854.016 kb on + strand, within dgoT at 854.017 kb on - strand, within dgoT at 854.017 kb on - strand, within dgoT at 854.018 kb on + strand, within dgoT at 854.018 kb on + strand, within dgoT at 854.042 kb on - strand, within dgoT at 854.042 kb on - strand, within dgoT at 854.046 kb on - strand, within dgoT at 854.065 kb on - strand, within dgoT at 854.285 kb on + strand at 854.315 kb on + strand at 854.316 kb on - strand at 854.316 kb on - strand at 854.316 kb on - strand at 854.316 kb on - strand at 854.341 kb on - strand at 854.348 kb on + strand at 854.348 kb on + strand at 854.349 kb on - strand at 854.405 kb on + strand at 854.411 kb on + strand at 854.412 kb on - strand at 854.434 kb on - strand at 854.509 kb on - strand, within dgoD at 854.528 kb on - strand, within dgoD at 854.528 kb on - strand, within dgoD at 854.540 kb on + strand, within dgoD at 854.644 kb on + strand, within dgoD at 854.747 kb on + strand, within dgoD at 854.792 kb on + strand, within dgoD at 854.821 kb on + strand, within dgoD at 854.821 kb on + strand, within dgoD at 854.822 kb on - strand, within dgoD at 855.053 kb on + strand, within dgoD at 855.080 kb on + strand, within dgoD at 855.080 kb on + strand, within dgoD at 855.127 kb on + strand, within dgoD at 855.128 kb on - strand, within dgoD at 855.135 kb on - strand, within dgoD at 855.325 kb on + strand, within dgoD at 855.451 kb on + strand at 855.553 kb on - strand, within dgoA at 855.567 kb on - strand, within dgoA at 855.567 kb on - strand, within dgoA at 855.710 kb on + strand, within dgoA at 855.835 kb on + strand, within dgoA at 855.890 kb on + strand, within dgoA at 855.896 kb on - strand, within dgoA at 855.896 kb on - strand, within dgoA at 856.075 kb on + strand at 856.076 kb on - strand at 856.104 kb on + strand at 856.106 kb on + strand at 856.107 kb on - strand at 856.107 kb on - strand at 856.107 kb on - strand at 856.177 kb on + strand, within dgoK at 856.234 kb on + strand, within dgoK at 856.354 kb on - strand, within dgoK at 856.455 kb on + strand, within dgoK
Per-strain Table
Position Strand Gene LocusTag Fraction MPec2 remove 853,413 - dgoT BNILDI_04315 0.38 -0.2 853,413 - dgoT BNILDI_04315 0.38 -0.4 853,447 - dgoT BNILDI_04315 0.41 -0.3 853,488 + dgoT BNILDI_04315 0.44 +1.0 853,590 - dgoT BNILDI_04315 0.52 +0.4 853,612 - dgoT BNILDI_04315 0.54 -0.2 853,638 - dgoT BNILDI_04315 0.56 -0.4 853,665 + dgoT BNILDI_04315 0.58 -0.7 853,666 - dgoT BNILDI_04315 0.58 +0.6 853,773 + dgoT BNILDI_04315 0.66 -0.5 853,773 + dgoT BNILDI_04315 0.66 +0.3 853,774 - dgoT BNILDI_04315 0.66 -0.3 853,775 + dgoT BNILDI_04315 0.66 +0.3 853,775 + dgoT BNILDI_04315 0.66 +2.5 853,888 + dgoT BNILDI_04315 0.75 +1.0 853,889 - dgoT BNILDI_04315 0.75 -0.2 853,889 - dgoT BNILDI_04315 0.75 -1.3 853,898 - dgoT BNILDI_04315 0.76 +1.8 853,954 - dgoT BNILDI_04315 0.80 +0.8 853,958 + dgoT BNILDI_04315 0.81 -1.1 853,959 - dgoT BNILDI_04315 0.81 +0.2 853,975 + dgoT BNILDI_04315 0.82 -0.5 854,011 + dgoT BNILDI_04315 0.85 -0.2 854,016 + dgoT BNILDI_04315 0.85 +0.2 854,017 - dgoT BNILDI_04315 0.85 -0.5 854,017 - dgoT BNILDI_04315 0.85 -0.9 854,018 + dgoT BNILDI_04315 0.85 +0.4 854,018 + dgoT BNILDI_04315 0.85 -0.4 854,042 - dgoT BNILDI_04315 0.87 -0.0 854,042 - dgoT BNILDI_04315 0.87 -0.2 854,046 - dgoT BNILDI_04315 0.87 +0.2 854,065 - dgoT BNILDI_04315 0.89 -2.4 854,285 + -1.5 854,315 + -0.0 854,316 - -0.1 854,316 - -0.0 854,316 - -1.3 854,316 - -1.6 854,341 - -0.9 854,348 + +1.1 854,348 + -0.4 854,349 - +1.1 854,405 + +1.3 854,411 + +1.6 854,412 - -0.7 854,434 - +0.2 854,509 - dgoD BNILDI_04320 0.16 +0.8 854,528 - dgoD BNILDI_04320 0.17 -0.5 854,528 - dgoD BNILDI_04320 0.17 -0.3 854,540 + dgoD BNILDI_04320 0.18 +0.6 854,644 + dgoD BNILDI_04320 0.28 -0.3 854,747 + dgoD BNILDI_04320 0.36 -0.1 854,792 + dgoD BNILDI_04320 0.40 -0.3 854,821 + dgoD BNILDI_04320 0.43 +1.7 854,821 + dgoD BNILDI_04320 0.43 +0.1 854,822 - dgoD BNILDI_04320 0.43 +0.9 855,053 + dgoD BNILDI_04320 0.63 -0.8 855,080 + dgoD BNILDI_04320 0.65 +0.4 855,080 + dgoD BNILDI_04320 0.65 -0.2 855,127 + dgoD BNILDI_04320 0.70 +1.3 855,128 - dgoD BNILDI_04320 0.70 +0.8 855,135 - dgoD BNILDI_04320 0.70 -0.4 855,325 + dgoD BNILDI_04320 0.87 -0.2 855,451 + -0.6 855,553 - dgoA BNILDI_04325 0.13 -0.2 855,567 - dgoA BNILDI_04325 0.15 +1.0 855,567 - dgoA BNILDI_04325 0.15 -0.7 855,710 + dgoA BNILDI_04325 0.38 +0.1 855,835 + dgoA BNILDI_04325 0.59 -0.4 855,890 + dgoA BNILDI_04325 0.67 -0.2 855,896 - dgoA BNILDI_04325 0.68 -0.6 855,896 - dgoA BNILDI_04325 0.68 +0.1 856,075 + +0.7 856,076 - -0.5 856,104 + +0.4 856,106 + -0.6 856,107 - +0.7 856,107 - +1.5 856,107 - +0.5 856,177 + dgoK BNILDI_04330 0.12 -0.6 856,234 + dgoK BNILDI_04330 0.18 -0.5 856,354 - dgoK BNILDI_04330 0.32 +0.3 856,455 + dgoK BNILDI_04330 0.43 -0.2
Or see this region's nucleotide sequence