Experiment: MPec2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yhfA and crp are separated by 301 nucleotides crp and yhfK are separated by 50 nucleotides yhfK and argD,dapC are separated by 66 nucleotides
BNILDI_02475: yhfA - OsmC family protein, at 467,385 to 467,789
yhfA
BNILDI_02480: crp - cAMP-activated global transcriptional regulator CRP, at 468,091 to 468,723
crp
BNILDI_02485: yhfK - Uncharacterized protein YhfK, at 468,774 to 470,864
yhfK
BNILDI_02490: argD,dapC - bifunctional acetylornithine/succinyldiaminopimelate transaminase, at 470,931 to 472,151
argD,dapC
Position (kb) 468
469
470
471 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 467.833 kb on - strand at 467.907 kb on + strand at 467.912 kb on + strand at 467.937 kb on + strand at 467.947 kb on + strand at 467.947 kb on + strand at 467.956 kb on + strand at 468.070 kb on + strand at 468.070 kb on + strand at 468.792 kb on + strand at 468.793 kb on - strand at 468.793 kb on - strand at 468.793 kb on - strand at 468.811 kb on - strand at 468.811 kb on - strand at 468.811 kb on - strand at 468.835 kb on + strand at 468.835 kb on + strand at 468.836 kb on - strand at 468.933 kb on - strand at 468.992 kb on + strand, within yhfK at 469.019 kb on - strand, within yhfK at 469.055 kb on - strand, within yhfK at 469.063 kb on + strand, within yhfK at 469.064 kb on - strand, within yhfK at 469.064 kb on - strand, within yhfK at 469.064 kb on - strand, within yhfK at 469.185 kb on + strand, within yhfK at 469.186 kb on - strand, within yhfK at 469.186 kb on - strand, within yhfK at 469.217 kb on + strand, within yhfK at 469.268 kb on - strand, within yhfK at 469.297 kb on - strand, within yhfK at 469.297 kb on - strand, within yhfK at 469.311 kb on + strand, within yhfK at 469.312 kb on - strand, within yhfK at 469.312 kb on - strand, within yhfK at 469.312 kb on - strand, within yhfK at 469.391 kb on - strand, within yhfK at 469.496 kb on + strand, within yhfK at 469.496 kb on + strand, within yhfK at 469.497 kb on - strand, within yhfK at 469.497 kb on - strand, within yhfK at 469.726 kb on - strand, within yhfK at 469.789 kb on + strand, within yhfK at 469.840 kb on - strand, within yhfK at 469.840 kb on - strand, within yhfK at 470.067 kb on - strand, within yhfK at 470.105 kb on + strand, within yhfK at 470.122 kb on - strand, within yhfK at 470.168 kb on + strand, within yhfK at 470.169 kb on - strand, within yhfK at 470.171 kb on + strand, within yhfK at 470.181 kb on + strand, within yhfK at 470.181 kb on + strand, within yhfK at 470.182 kb on - strand, within yhfK at 470.194 kb on + strand, within yhfK at 470.194 kb on + strand, within yhfK at 470.195 kb on - strand, within yhfK at 470.195 kb on - strand, within yhfK at 470.195 kb on - strand, within yhfK at 470.217 kb on + strand, within yhfK at 470.217 kb on + strand, within yhfK at 470.218 kb on - strand, within yhfK at 470.218 kb on - strand, within yhfK at 470.218 kb on - strand, within yhfK at 470.258 kb on - strand, within yhfK at 470.336 kb on - strand, within yhfK at 470.336 kb on - strand, within yhfK at 470.387 kb on + strand, within yhfK at 470.387 kb on + strand, within yhfK at 470.429 kb on + strand, within yhfK at 470.429 kb on + strand, within yhfK at 470.430 kb on - strand, within yhfK at 470.430 kb on - strand, within yhfK at 470.439 kb on + strand, within yhfK at 470.440 kb on - strand, within yhfK at 470.441 kb on + strand, within yhfK at 470.442 kb on - strand, within yhfK at 470.498 kb on + strand, within yhfK at 470.498 kb on + strand, within yhfK at 470.544 kb on - strand, within yhfK at 470.544 kb on - strand, within yhfK at 470.608 kb on + strand, within yhfK at 470.608 kb on + strand, within yhfK at 470.609 kb on - strand, within yhfK at 470.655 kb on + strand, within yhfK at 470.733 kb on - strand at 470.749 kb on + strand at 470.862 kb on + strand at 470.863 kb on - strand at 470.928 kb on + strand at 471.076 kb on + strand, within argD,dapC at 471.077 kb on - strand, within argD,dapC at 471.156 kb on - strand, within argD,dapC at 471.167 kb on - strand, within argD,dapC at 471.167 kb on - strand, within argD,dapC at 471.243 kb on - strand, within argD,dapC at 471.430 kb on + strand, within argD,dapC at 471.431 kb on - strand, within argD,dapC at 471.431 kb on - strand, within argD,dapC at 471.750 kb on - strand, within argD,dapC at 471.770 kb on + strand, within argD,dapC
Per-strain Table
Position Strand Gene LocusTag Fraction MPec2 remove 467,833 - +1.5 467,907 + -0.5 467,912 + +0.0 467,937 + +0.7 467,947 + +1.0 467,947 + +2.0 467,956 + +1.0 468,070 + -0.8 468,070 + -0.3 468,792 + -0.3 468,793 - -0.0 468,793 - -0.4 468,793 - +1.0 468,811 - -0.1 468,811 - -0.8 468,811 - +1.4 468,835 + -0.3 468,835 + +0.4 468,836 - +0.0 468,933 - +0.3 468,992 + yhfK BNILDI_02485 0.10 -0.8 469,019 - yhfK BNILDI_02485 0.12 +0.0 469,055 - yhfK BNILDI_02485 0.13 -0.8 469,063 + yhfK BNILDI_02485 0.14 -0.3 469,064 - yhfK BNILDI_02485 0.14 -0.6 469,064 - yhfK BNILDI_02485 0.14 -0.3 469,064 - yhfK BNILDI_02485 0.14 +0.2 469,185 + yhfK BNILDI_02485 0.20 -0.2 469,186 - yhfK BNILDI_02485 0.20 -0.3 469,186 - yhfK BNILDI_02485 0.20 -0.4 469,217 + yhfK BNILDI_02485 0.21 -0.0 469,268 - yhfK BNILDI_02485 0.24 +0.8 469,297 - yhfK BNILDI_02485 0.25 -1.7 469,297 - yhfK BNILDI_02485 0.25 +0.0 469,311 + yhfK BNILDI_02485 0.26 +0.4 469,312 - yhfK BNILDI_02485 0.26 +0.2 469,312 - yhfK BNILDI_02485 0.26 -0.3 469,312 - yhfK BNILDI_02485 0.26 -1.9 469,391 - yhfK BNILDI_02485 0.30 +0.0 469,496 + yhfK BNILDI_02485 0.35 -0.6 469,496 + yhfK BNILDI_02485 0.35 +0.9 469,497 - yhfK BNILDI_02485 0.35 -0.6 469,497 - yhfK BNILDI_02485 0.35 +0.2 469,726 - yhfK BNILDI_02485 0.46 +0.7 469,789 + yhfK BNILDI_02485 0.49 -0.1 469,840 - yhfK BNILDI_02485 0.51 +1.5 469,840 - yhfK BNILDI_02485 0.51 -0.2 470,067 - yhfK BNILDI_02485 0.62 +0.1 470,105 + yhfK BNILDI_02485 0.64 -0.6 470,122 - yhfK BNILDI_02485 0.64 -0.6 470,168 + yhfK BNILDI_02485 0.67 +0.1 470,169 - yhfK BNILDI_02485 0.67 -0.9 470,171 + yhfK BNILDI_02485 0.67 +0.4 470,181 + yhfK BNILDI_02485 0.67 +0.7 470,181 + yhfK BNILDI_02485 0.67 +0.4 470,182 - yhfK BNILDI_02485 0.67 +1.9 470,194 + yhfK BNILDI_02485 0.68 -0.3 470,194 + yhfK BNILDI_02485 0.68 +1.0 470,195 - yhfK BNILDI_02485 0.68 +0.9 470,195 - yhfK BNILDI_02485 0.68 -0.9 470,195 - yhfK BNILDI_02485 0.68 +0.0 470,217 + yhfK BNILDI_02485 0.69 +4.1 470,217 + yhfK BNILDI_02485 0.69 +0.0 470,218 - yhfK BNILDI_02485 0.69 -0.4 470,218 - yhfK BNILDI_02485 0.69 -0.1 470,218 - yhfK BNILDI_02485 0.69 +0.8 470,258 - yhfK BNILDI_02485 0.71 +0.1 470,336 - yhfK BNILDI_02485 0.75 +2.0 470,336 - yhfK BNILDI_02485 0.75 -1.1 470,387 + yhfK BNILDI_02485 0.77 +0.5 470,387 + yhfK BNILDI_02485 0.77 -1.1 470,429 + yhfK BNILDI_02485 0.79 -1.7 470,429 + yhfK BNILDI_02485 0.79 -0.3 470,430 - yhfK BNILDI_02485 0.79 -0.8 470,430 - yhfK BNILDI_02485 0.79 +0.5 470,439 + yhfK BNILDI_02485 0.80 -0.3 470,440 - yhfK BNILDI_02485 0.80 +0.2 470,441 + yhfK BNILDI_02485 0.80 +0.7 470,442 - yhfK BNILDI_02485 0.80 -0.3 470,498 + yhfK BNILDI_02485 0.82 -1.0 470,498 + yhfK BNILDI_02485 0.82 +0.7 470,544 - yhfK BNILDI_02485 0.85 -0.1 470,544 - yhfK BNILDI_02485 0.85 +0.7 470,608 + yhfK BNILDI_02485 0.88 +0.0 470,608 + yhfK BNILDI_02485 0.88 +0.3 470,609 - yhfK BNILDI_02485 0.88 +0.2 470,655 + yhfK BNILDI_02485 0.90 -0.3 470,733 - +0.6 470,749 + -0.8 470,862 + +0.1 470,863 - -0.4 470,928 + +0.2 471,076 + argD,dapC BNILDI_02490 0.12 +0.2 471,077 - argD,dapC BNILDI_02490 0.12 -0.3 471,156 - argD,dapC BNILDI_02490 0.18 -1.1 471,167 - argD,dapC BNILDI_02490 0.19 -0.2 471,167 - argD,dapC BNILDI_02490 0.19 +0.6 471,243 - argD,dapC BNILDI_02490 0.26 -1.1 471,430 + argD,dapC BNILDI_02490 0.41 -0.5 471,431 - argD,dapC BNILDI_02490 0.41 +0.2 471,431 - argD,dapC BNILDI_02490 0.41 -0.6 471,750 - argD,dapC BNILDI_02490 0.67 -0.8 471,770 + argD,dapC BNILDI_02490 0.69 -0.4
Or see this region's nucleotide sequence