Strain Fitness in Erwinia amylovora T8 around OLJFJH_16620

Experiment: FE-KB2-T3 (Control KB Rep 2 Time 3)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_16615 and OLJFJH_16620 are separated by 182 nucleotidesOLJFJH_16620 and OLJFJH_16625 are separated by 161 nucleotides OLJFJH_16615: OLJFJH_16615 - glycosyl transferase, at 3,506,551 to 3,507,702 _16615 OLJFJH_16620: OLJFJH_16620 - isopentenyl-diphosphate Delta-isomerase, at 3,507,885 to 3,508,430 _16620 OLJFJH_16625: OLJFJH_16625 - Suppressor of fused protein (SUFU), at 3,508,592 to 3,509,701 _16625 Position (kb) 3507 3508 3509Strain fitness (log2 ratio) -2 -1 0 1 2at 3506.899 kb on - strand, within OLJFJH_16615at 3506.936 kb on + strand, within OLJFJH_16615at 3507.020 kb on + strand, within OLJFJH_16615at 3507.088 kb on + strand, within OLJFJH_16615at 3507.201 kb on + strand, within OLJFJH_16615at 3507.201 kb on + strand, within OLJFJH_16615at 3507.201 kb on + strand, within OLJFJH_16615at 3507.201 kb on + strand, within OLJFJH_16615at 3507.202 kb on - strand, within OLJFJH_16615at 3507.204 kb on + strand, within OLJFJH_16615at 3507.204 kb on + strand, within OLJFJH_16615at 3507.204 kb on + strand, within OLJFJH_16615at 3507.204 kb on + strand, within OLJFJH_16615at 3507.205 kb on - strand, within OLJFJH_16615at 3507.205 kb on - strand, within OLJFJH_16615at 3507.241 kb on + strand, within OLJFJH_16615at 3507.306 kb on + strand, within OLJFJH_16615at 3507.307 kb on - strand, within OLJFJH_16615at 3507.370 kb on + strand, within OLJFJH_16615at 3507.371 kb on - strand, within OLJFJH_16615at 3507.371 kb on - strand, within OLJFJH_16615at 3507.537 kb on - strand, within OLJFJH_16615at 3507.598 kb on - strandat 3507.598 kb on - strandat 3507.598 kb on - strandat 3507.699 kb on - strandat 3507.729 kb on + strandat 3507.878 kb on + strandat 3507.911 kb on + strandat 3507.914 kb on - strandat 3508.079 kb on - strand, within OLJFJH_16620at 3508.090 kb on + strand, within OLJFJH_16620at 3508.241 kb on + strand, within OLJFJH_16620at 3508.244 kb on + strand, within OLJFJH_16620at 3508.244 kb on + strand, within OLJFJH_16620at 3508.268 kb on - strand, within OLJFJH_16620at 3508.313 kb on + strand, within OLJFJH_16620at 3508.313 kb on + strand, within OLJFJH_16620at 3508.314 kb on - strand, within OLJFJH_16620at 3508.314 kb on - strand, within OLJFJH_16620at 3508.321 kb on + strand, within OLJFJH_16620at 3508.322 kb on - strand, within OLJFJH_16620at 3508.360 kb on - strand, within OLJFJH_16620at 3508.360 kb on - strand, within OLJFJH_16620at 3508.457 kb on + strandat 3508.467 kb on + strandat 3508.468 kb on - strandat 3508.580 kb on + strandat 3508.633 kb on + strandat 3508.656 kb on - strandat 3508.855 kb on + strand, within OLJFJH_16625at 3508.855 kb on + strand, within OLJFJH_16625at 3508.855 kb on + strand, within OLJFJH_16625at 3508.876 kb on + strand, within OLJFJH_16625at 3508.877 kb on - strand, within OLJFJH_16625at 3509.064 kb on + strand, within OLJFJH_16625at 3509.083 kb on - strand, within OLJFJH_16625at 3509.113 kb on + strand, within OLJFJH_16625at 3509.130 kb on + strand, within OLJFJH_16625at 3509.133 kb on + strand, within OLJFJH_16625at 3509.133 kb on + strand, within OLJFJH_16625at 3509.134 kb on - strand, within OLJFJH_16625at 3509.134 kb on - strand, within OLJFJH_16625at 3509.134 kb on - strand, within OLJFJH_16625at 3509.134 kb on - strand, within OLJFJH_16625at 3509.134 kb on - strand, within OLJFJH_16625at 3509.254 kb on - strand, within OLJFJH_16625at 3509.256 kb on + strand, within OLJFJH_16625at 3509.256 kb on + strand, within OLJFJH_16625at 3509.256 kb on + strand, within OLJFJH_16625at 3509.257 kb on - strand, within OLJFJH_16625at 3509.257 kb on - strand, within OLJFJH_16625at 3509.257 kb on - strand, within OLJFJH_16625at 3509.308 kb on + strand, within OLJFJH_16625at 3509.308 kb on + strand, within OLJFJH_16625at 3509.309 kb on - strand, within OLJFJH_16625

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T3 (Control KB Rep 2 Time 3)
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3,506,899 - OLJFJH_16615 0.30 +0.0
3,506,936 + OLJFJH_16615 0.33 -0.0
3,507,020 + OLJFJH_16615 0.41 +0.3
3,507,088 + OLJFJH_16615 0.47 -0.6
3,507,201 + OLJFJH_16615 0.56 +0.2
3,507,201 + OLJFJH_16615 0.56 +0.2
3,507,201 + OLJFJH_16615 0.56 -0.6
3,507,201 + OLJFJH_16615 0.56 -0.5
3,507,202 - OLJFJH_16615 0.57 -0.1
3,507,204 + OLJFJH_16615 0.57 +1.5
3,507,204 + OLJFJH_16615 0.57 -0.6
3,507,204 + OLJFJH_16615 0.57 -0.2
3,507,204 + OLJFJH_16615 0.57 -0.2
3,507,205 - OLJFJH_16615 0.57 +0.3
3,507,205 - OLJFJH_16615 0.57 +0.6
3,507,241 + OLJFJH_16615 0.60 -0.2
3,507,306 + OLJFJH_16615 0.66 -0.5
3,507,307 - OLJFJH_16615 0.66 +0.1
3,507,370 + OLJFJH_16615 0.71 -0.0
3,507,371 - OLJFJH_16615 0.71 -0.3
3,507,371 - OLJFJH_16615 0.71 +0.5
3,507,537 - OLJFJH_16615 0.86 +0.1
3,507,598 - +0.1
3,507,598 - -2.0
3,507,598 - +0.5
3,507,699 - -0.3
3,507,729 + +0.1
3,507,878 + +0.1
3,507,911 + -1.3
3,507,914 - -0.4
3,508,079 - OLJFJH_16620 0.36 +2.4
3,508,090 + OLJFJH_16620 0.38 -0.5
3,508,241 + OLJFJH_16620 0.65 -0.7
3,508,244 + OLJFJH_16620 0.66 -0.8
3,508,244 + OLJFJH_16620 0.66 -0.9
3,508,268 - OLJFJH_16620 0.70 -0.2
3,508,313 + OLJFJH_16620 0.78 -0.9
3,508,313 + OLJFJH_16620 0.78 -0.3
3,508,314 - OLJFJH_16620 0.79 -0.8
3,508,314 - OLJFJH_16620 0.79 -0.2
3,508,321 + OLJFJH_16620 0.80 -0.7
3,508,322 - OLJFJH_16620 0.80 +1.9
3,508,360 - OLJFJH_16620 0.87 -0.7
3,508,360 - OLJFJH_16620 0.87 -1.2
3,508,457 + -0.5
3,508,467 + +0.5
3,508,468 - -0.2
3,508,580 + +0.2
3,508,633 + +0.8
3,508,656 - -0.6
3,508,855 + OLJFJH_16625 0.24 +0.0
3,508,855 + OLJFJH_16625 0.24 +0.4
3,508,855 + OLJFJH_16625 0.24 +0.8
3,508,876 + OLJFJH_16625 0.26 -0.4
3,508,877 - OLJFJH_16625 0.26 +0.1
3,509,064 + OLJFJH_16625 0.43 +0.3
3,509,083 - OLJFJH_16625 0.44 -0.5
3,509,113 + OLJFJH_16625 0.47 -1.1
3,509,130 + OLJFJH_16625 0.48 -0.3
3,509,133 + OLJFJH_16625 0.49 -0.2
3,509,133 + OLJFJH_16625 0.49 +0.2
3,509,134 - OLJFJH_16625 0.49 +0.5
3,509,134 - OLJFJH_16625 0.49 -0.5
3,509,134 - OLJFJH_16625 0.49 +0.6
3,509,134 - OLJFJH_16625 0.49 +0.1
3,509,134 - OLJFJH_16625 0.49 -0.1
3,509,254 - OLJFJH_16625 0.60 +0.0
3,509,256 + OLJFJH_16625 0.60 +0.0
3,509,256 + OLJFJH_16625 0.60 +0.6
3,509,256 + OLJFJH_16625 0.60 +0.5
3,509,257 - OLJFJH_16625 0.60 -0.2
3,509,257 - OLJFJH_16625 0.60 +0.2
3,509,257 - OLJFJH_16625 0.60 -0.0
3,509,308 + OLJFJH_16625 0.65 -0.2
3,509,308 + OLJFJH_16625 0.65 -0.1
3,509,309 - OLJFJH_16625 0.65 -0.1

Or see this region's nucleotide sequence