Strain Fitness in Erwinia amylovora T8 around OLJFJH_08845

Experiment: FE-KB2-T3 (Control KB Rep 2 Time 3)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_08835 and OLJFJH_08840 are separated by 44 nucleotidesOLJFJH_08840 and OLJFJH_08845 are separated by 5 nucleotidesOLJFJH_08845 and OLJFJH_08850 are separated by 279 nucleotidesOLJFJH_08850 and OLJFJH_08855 are separated by 22 nucleotides OLJFJH_08835: OLJFJH_08835 - site-specific tyrosine recombinase XerD, at 1,810,134 to 1,811,027 _08835 OLJFJH_08840: OLJFJH_08840 - bifunctional protein-disulfide isomerase/oxidoreductase DsbC, at 1,811,072 to 1,811,776 _08840 OLJFJH_08845: OLJFJH_08845 - single-stranded-DNA-specific exonuclease RecJ, at 1,811,782 to 1,813,500 _08845 OLJFJH_08850: OLJFJH_08850 - peptide chain release factor 2, at 1,813,780 to 1,813,857 _08850 OLJFJH_08855: OLJFJH_08855 - peptide chain release factor 2, at 1,813,880 to 1,814,878 _08855 Position (kb) 1811 1812 1813 1814Strain fitness (log2 ratio) -2 -1 0 1at 1810.818 kb on + strand, within OLJFJH_08835at 1810.930 kb on + strand, within OLJFJH_08835at 1810.930 kb on + strand, within OLJFJH_08835at 1810.931 kb on - strand, within OLJFJH_08835at 1810.931 kb on - strand, within OLJFJH_08835at 1810.934 kb on - strand, within OLJFJH_08835at 1810.965 kb on + strandat 1810.965 kb on + strandat 1810.965 kb on + strandat 1810.966 kb on - strandat 1810.967 kb on + strandat 1810.967 kb on + strandat 1811.047 kb on + strandat 1811.047 kb on + strandat 1811.047 kb on + strandat 1811.047 kb on + strandat 1811.047 kb on + strandat 1811.047 kb on + strandat 1811.048 kb on - strandat 1811.048 kb on - strandat 1811.048 kb on - strandat 1811.049 kb on + strandat 1811.049 kb on + strandat 1811.067 kb on + strandat 1811.067 kb on + strandat 1811.067 kb on + strandat 1811.067 kb on + strandat 1811.068 kb on - strandat 1811.068 kb on - strandat 1811.068 kb on - strandat 1811.068 kb on - strandat 1811.068 kb on - strandat 1811.068 kb on - strandat 1811.084 kb on + strandat 1811.092 kb on - strandat 1811.101 kb on - strandat 1811.101 kb on - strandat 1811.104 kb on - strandat 1811.104 kb on - strandat 1811.146 kb on + strand, within OLJFJH_08840at 1811.147 kb on - strand, within OLJFJH_08840at 1811.175 kb on + strand, within OLJFJH_08840at 1811.175 kb on + strand, within OLJFJH_08840at 1811.176 kb on - strand, within OLJFJH_08840at 1811.242 kb on - strand, within OLJFJH_08840at 1811.242 kb on - strand, within OLJFJH_08840at 1811.246 kb on + strand, within OLJFJH_08840at 1811.246 kb on + strand, within OLJFJH_08840at 1811.246 kb on + strand, within OLJFJH_08840at 1811.247 kb on - strand, within OLJFJH_08840at 1811.247 kb on - strand, within OLJFJH_08840at 1811.289 kb on - strand, within OLJFJH_08840at 1811.289 kb on - strand, within OLJFJH_08840at 1811.375 kb on + strand, within OLJFJH_08840at 1811.396 kb on + strand, within OLJFJH_08840at 1811.397 kb on - strand, within OLJFJH_08840at 1811.397 kb on - strand, within OLJFJH_08840at 1811.420 kb on - strand, within OLJFJH_08840at 1811.465 kb on + strand, within OLJFJH_08840at 1811.645 kb on + strand, within OLJFJH_08840at 1811.646 kb on - strand, within OLJFJH_08840at 1811.647 kb on + strand, within OLJFJH_08840at 1811.647 kb on + strand, within OLJFJH_08840at 1811.647 kb on + strand, within OLJFJH_08840at 1811.647 kb on + strand, within OLJFJH_08840at 1811.647 kb on + strand, within OLJFJH_08840at 1811.647 kb on + strand, within OLJFJH_08840at 1811.648 kb on - strand, within OLJFJH_08840at 1811.648 kb on - strand, within OLJFJH_08840at 1811.648 kb on - strand, within OLJFJH_08840at 1811.648 kb on - strand, within OLJFJH_08840at 1811.648 kb on - strand, within OLJFJH_08840at 1811.648 kb on - strand, within OLJFJH_08840at 1811.648 kb on - strand, within OLJFJH_08840at 1811.686 kb on + strand, within OLJFJH_08840at 1811.790 kb on + strandat 1812.003 kb on + strand, within OLJFJH_08845at 1812.003 kb on + strand, within OLJFJH_08845at 1812.003 kb on + strand, within OLJFJH_08845at 1812.004 kb on - strand, within OLJFJH_08845at 1812.094 kb on + strand, within OLJFJH_08845at 1812.124 kb on + strand, within OLJFJH_08845at 1812.199 kb on - strand, within OLJFJH_08845at 1812.240 kb on + strand, within OLJFJH_08845at 1812.371 kb on - strand, within OLJFJH_08845at 1812.414 kb on - strand, within OLJFJH_08845at 1812.663 kb on + strand, within OLJFJH_08845at 1812.663 kb on + strand, within OLJFJH_08845at 1812.664 kb on - strand, within OLJFJH_08845at 1812.664 kb on - strand, within OLJFJH_08845at 1812.761 kb on + strand, within OLJFJH_08845at 1812.762 kb on - strand, within OLJFJH_08845at 1812.762 kb on - strand, within OLJFJH_08845at 1812.847 kb on + strand, within OLJFJH_08845at 1812.847 kb on + strand, within OLJFJH_08845at 1812.848 kb on - strand, within OLJFJH_08845at 1812.848 kb on - strand, within OLJFJH_08845at 1812.848 kb on - strand, within OLJFJH_08845at 1812.848 kb on - strand, within OLJFJH_08845at 1812.848 kb on - strand, within OLJFJH_08845at 1812.848 kb on - strand, within OLJFJH_08845at 1812.848 kb on - strand, within OLJFJH_08845at 1812.879 kb on + strand, within OLJFJH_08845at 1812.987 kb on + strand, within OLJFJH_08845at 1812.988 kb on - strand, within OLJFJH_08845at 1813.278 kb on + strand, within OLJFJH_08845at 1813.287 kb on - strand, within OLJFJH_08845at 1813.622 kb on + strandat 1813.652 kb on + strandat 1813.652 kb on + strandat 1813.653 kb on - strandat 1813.653 kb on - strandat 1813.653 kb on - strandat 1813.715 kb on + strandat 1813.715 kb on + strandat 1813.737 kb on + strandat 1813.737 kb on + strandat 1813.739 kb on + strandat 1813.743 kb on + strandat 1813.743 kb on + strandat 1813.743 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T3 (Control KB Rep 2 Time 3)
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1,810,818 + OLJFJH_08835 0.77 -2.5
1,810,930 + OLJFJH_08835 0.89 -2.7
1,810,930 + OLJFJH_08835 0.89 -2.7
1,810,931 - OLJFJH_08835 0.89 -1.8
1,810,931 - OLJFJH_08835 0.89 -0.8
1,810,934 - OLJFJH_08835 0.89 +0.7
1,810,965 + -2.1
1,810,965 + -1.8
1,810,965 + -2.3
1,810,966 - -1.3
1,810,967 + -1.0
1,810,967 + -1.3
1,811,047 + -0.7
1,811,047 + +0.1
1,811,047 + +0.2
1,811,047 + -1.0
1,811,047 + -0.1
1,811,047 + -0.5
1,811,048 - +0.3
1,811,048 - +0.0
1,811,048 - -0.5
1,811,049 + -0.6
1,811,049 + -0.1
1,811,067 + -0.0
1,811,067 + +0.0
1,811,067 + -0.5
1,811,067 + +0.6
1,811,068 - +0.0
1,811,068 - -0.3
1,811,068 - -0.1
1,811,068 - -0.1
1,811,068 - -0.8
1,811,068 - -0.7
1,811,084 + -0.4
1,811,092 - +0.3
1,811,101 - -0.0
1,811,101 - +0.1
1,811,104 - -0.6
1,811,104 - +0.1
1,811,146 + OLJFJH_08840 0.10 +0.1
1,811,147 - OLJFJH_08840 0.11 +0.6
1,811,175 + OLJFJH_08840 0.15 -0.5
1,811,175 + OLJFJH_08840 0.15 -0.2
1,811,176 - OLJFJH_08840 0.15 -0.8
1,811,242 - OLJFJH_08840 0.24 +0.2
1,811,242 - OLJFJH_08840 0.24 -1.1
1,811,246 + OLJFJH_08840 0.25 -0.0
1,811,246 + OLJFJH_08840 0.25 -0.5
1,811,246 + OLJFJH_08840 0.25 -2.0
1,811,247 - OLJFJH_08840 0.25 +0.0
1,811,247 - OLJFJH_08840 0.25 -0.8
1,811,289 - OLJFJH_08840 0.31 +0.7
1,811,289 - OLJFJH_08840 0.31 -0.3
1,811,375 + OLJFJH_08840 0.43 -0.4
1,811,396 + OLJFJH_08840 0.46 -0.0
1,811,397 - OLJFJH_08840 0.46 -0.6
1,811,397 - OLJFJH_08840 0.46 +0.3
1,811,420 - OLJFJH_08840 0.49 -0.6
1,811,465 + OLJFJH_08840 0.56 -0.3
1,811,645 + OLJFJH_08840 0.81 -0.5
1,811,646 - OLJFJH_08840 0.81 +0.0
1,811,647 + OLJFJH_08840 0.82 +0.8
1,811,647 + OLJFJH_08840 0.82 -0.3
1,811,647 + OLJFJH_08840 0.82 +0.1
1,811,647 + OLJFJH_08840 0.82 -0.0
1,811,647 + OLJFJH_08840 0.82 -0.0
1,811,647 + OLJFJH_08840 0.82 +0.2
1,811,648 - OLJFJH_08840 0.82 -0.3
1,811,648 - OLJFJH_08840 0.82 -0.3
1,811,648 - OLJFJH_08840 0.82 +0.1
1,811,648 - OLJFJH_08840 0.82 +0.1
1,811,648 - OLJFJH_08840 0.82 -0.8
1,811,648 - OLJFJH_08840 0.82 +0.3
1,811,648 - OLJFJH_08840 0.82 -0.3
1,811,686 + OLJFJH_08840 0.87 -0.3
1,811,790 + -0.1
1,812,003 + OLJFJH_08845 0.13 -0.4
1,812,003 + OLJFJH_08845 0.13 +0.2
1,812,003 + OLJFJH_08845 0.13 -0.3
1,812,004 - OLJFJH_08845 0.13 -0.8
1,812,094 + OLJFJH_08845 0.18 -0.6
1,812,124 + OLJFJH_08845 0.20 -0.3
1,812,199 - OLJFJH_08845 0.24 -0.2
1,812,240 + OLJFJH_08845 0.27 -0.2
1,812,371 - OLJFJH_08845 0.34 -0.5
1,812,414 - OLJFJH_08845 0.37 +0.0
1,812,663 + OLJFJH_08845 0.51 -0.0
1,812,663 + OLJFJH_08845 0.51 -0.4
1,812,664 - OLJFJH_08845 0.51 -0.2
1,812,664 - OLJFJH_08845 0.51 -0.3
1,812,761 + OLJFJH_08845 0.57 -0.6
1,812,762 - OLJFJH_08845 0.57 +0.2
1,812,762 - OLJFJH_08845 0.57 -0.5
1,812,847 + OLJFJH_08845 0.62 -0.2
1,812,847 + OLJFJH_08845 0.62 +0.2
1,812,848 - OLJFJH_08845 0.62 -0.9
1,812,848 - OLJFJH_08845 0.62 +0.0
1,812,848 - OLJFJH_08845 0.62 +0.2
1,812,848 - OLJFJH_08845 0.62 +0.7
1,812,848 - OLJFJH_08845 0.62 +0.1
1,812,848 - OLJFJH_08845 0.62 -0.3
1,812,848 - OLJFJH_08845 0.62 -0.6
1,812,879 + OLJFJH_08845 0.64 -0.4
1,812,987 + OLJFJH_08845 0.70 -0.1
1,812,988 - OLJFJH_08845 0.70 -0.5
1,813,278 + OLJFJH_08845 0.87 +0.0
1,813,287 - OLJFJH_08845 0.88 -0.5
1,813,622 + +0.0
1,813,652 + -1.8
1,813,652 + +0.5
1,813,653 - +0.1
1,813,653 - +1.2
1,813,653 - +0.2
1,813,715 + -0.7
1,813,715 + -0.3
1,813,737 + +0.3
1,813,737 + +0.7
1,813,739 + +0.3
1,813,743 + -0.1
1,813,743 + -0.4
1,813,743 + +0.1

Or see this region's nucleotide sequence