Strain Fitness in Erwinia amylovora T8 around OLJFJH_05725

Experiment: FE-KB2-T3 (Control KB Rep 2 Time 3)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_05715 and OLJFJH_05720 are separated by 291 nucleotidesOLJFJH_05720 and OLJFJH_05725 are separated by 43 nucleotidesOLJFJH_05725 and OLJFJH_05730 are separated by 97 nucleotidesOLJFJH_05730 and OLJFJH_05735 overlap by 15 nucleotidesOLJFJH_05735 and OLJFJH_05740 are separated by 68 nucleotides OLJFJH_05715: OLJFJH_05715 - DUF3800 domain-containing protein, at 1,160,056 to 1,160,787 _05715 OLJFJH_05720: OLJFJH_05720 - hypothetical protein, at 1,161,079 to 1,161,216 _05720 OLJFJH_05725: OLJFJH_05725 - DUF6387 domain-containing protein, at 1,161,260 to 1,162,111 _05725 OLJFJH_05730: OLJFJH_05730 - hypothetical protein, at 1,162,209 to 1,162,739 _05730 OLJFJH_05735: OLJFJH_05735 - hypothetical protein, at 1,162,725 to 1,162,919 _05735 OLJFJH_05740: OLJFJH_05740 - Tyr recombinase domain-containing protein, at 1,162,988 to 1,163,716 _05740 Position (kb) 1161 1162 1163Strain fitness (log2 ratio) -1 0 1at 1160.827 kb on + strandat 1161.046 kb on - strandat 1161.058 kb on - strandat 1161.397 kb on + strand, within OLJFJH_05725at 1161.403 kb on - strand, within OLJFJH_05725at 1161.441 kb on + strand, within OLJFJH_05725at 1161.441 kb on + strand, within OLJFJH_05725at 1161.476 kb on + strand, within OLJFJH_05725at 1161.477 kb on - strand, within OLJFJH_05725at 1161.498 kb on - strand, within OLJFJH_05725at 1161.529 kb on - strand, within OLJFJH_05725at 1161.529 kb on - strand, within OLJFJH_05725at 1161.671 kb on + strand, within OLJFJH_05725at 1161.680 kb on + strand, within OLJFJH_05725at 1161.698 kb on + strand, within OLJFJH_05725at 1161.698 kb on + strand, within OLJFJH_05725at 1161.699 kb on - strand, within OLJFJH_05725at 1161.779 kb on - strand, within OLJFJH_05725at 1161.788 kb on - strand, within OLJFJH_05725at 1161.829 kb on + strand, within OLJFJH_05725at 1161.830 kb on - strand, within OLJFJH_05725at 1161.830 kb on - strand, within OLJFJH_05725at 1161.882 kb on + strand, within OLJFJH_05725at 1161.883 kb on - strand, within OLJFJH_05725at 1161.971 kb on - strand, within OLJFJH_05725at 1162.146 kb on - strandat 1162.146 kb on - strandat 1162.172 kb on + strandat 1162.185 kb on - strandat 1162.193 kb on - strandat 1162.196 kb on - strandat 1162.402 kb on - strand, within OLJFJH_05730

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T3 (Control KB Rep 2 Time 3)
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1,160,827 + +0.5
1,161,046 - +0.3
1,161,058 - -0.2
1,161,397 + OLJFJH_05725 0.16 +0.1
1,161,403 - OLJFJH_05725 0.17 +0.1
1,161,441 + OLJFJH_05725 0.21 +0.3
1,161,441 + OLJFJH_05725 0.21 +0.2
1,161,476 + OLJFJH_05725 0.25 +0.6
1,161,477 - OLJFJH_05725 0.25 +0.3
1,161,498 - OLJFJH_05725 0.28 +0.2
1,161,529 - OLJFJH_05725 0.32 -0.1
1,161,529 - OLJFJH_05725 0.32 +0.2
1,161,671 + OLJFJH_05725 0.48 +0.2
1,161,680 + OLJFJH_05725 0.49 -0.1
1,161,698 + OLJFJH_05725 0.51 +0.6
1,161,698 + OLJFJH_05725 0.51 -0.1
1,161,699 - OLJFJH_05725 0.52 -0.2
1,161,779 - OLJFJH_05725 0.61 +0.8
1,161,788 - OLJFJH_05725 0.62 +0.1
1,161,829 + OLJFJH_05725 0.67 -0.2
1,161,830 - OLJFJH_05725 0.67 +0.4
1,161,830 - OLJFJH_05725 0.67 +0.3
1,161,882 + OLJFJH_05725 0.73 +0.2
1,161,883 - OLJFJH_05725 0.73 -0.3
1,161,971 - OLJFJH_05725 0.83 +0.6
1,162,146 - -0.5
1,162,146 - -0.5
1,162,172 + -1.5
1,162,185 - -0.0
1,162,193 - -0.4
1,162,196 - -0.0
1,162,402 - OLJFJH_05730 0.36 -0.2

Or see this region's nucleotide sequence