Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06933 and MPMX19_06934 overlap by 4 nucleotides MPMX19_06934 and MPMX19_06935 are separated by 31 nucleotides MPMX19_06935 and MPMX19_06936 are separated by 45 nucleotides MPMX19_06936 and MPMX19_06937 are separated by 133 nucleotides
MPMX19_06933: MPMX19_06933 - Manganese transport system ATP-binding protein MntB, at 206,033 to 206,803
_06933
MPMX19_06934: MPMX19_06934 - Manganese transport system membrane protein MntB, at 206,800 to 207,684
_06934
MPMX19_06935: MPMX19_06935 - putative periplasmic iron-binding protein, at 207,716 to 208,639
_06935
MPMX19_06936: MPMX19_06936 - hypothetical protein, at 208,685 to 209,401
_06936
MPMX19_06937: MPMX19_06937 - hypothetical protein, at 209,535 to 210,818
_06937
Position (kb) 207
208
209 Strain fitness (log2 ratio) -2
-1
0
1 at 206.809 kb on + strand at 206.809 kb on + strand at 206.810 kb on - strand at 206.810 kb on - strand at 206.810 kb on - strand at 206.810 kb on - strand at 207.115 kb on + strand, within MPMX19_06934 at 207.115 kb on + strand, within MPMX19_06934 at 207.115 kb on + strand, within MPMX19_06934 at 207.115 kb on + strand, within MPMX19_06934 at 207.116 kb on - strand, within MPMX19_06934 at 207.116 kb on - strand, within MPMX19_06934 at 207.116 kb on - strand, within MPMX19_06934 at 207.896 kb on + strand, within MPMX19_06935 at 207.896 kb on + strand, within MPMX19_06935 at 207.896 kb on + strand, within MPMX19_06935 at 207.897 kb on - strand, within MPMX19_06935 at 207.897 kb on - strand, within MPMX19_06935 at 207.897 kb on - strand, within MPMX19_06935 at 207.897 kb on - strand, within MPMX19_06935 at 208.005 kb on - strand, within MPMX19_06935 at 208.151 kb on + strand, within MPMX19_06935 at 208.151 kb on + strand, within MPMX19_06935 at 208.151 kb on + strand, within MPMX19_06935 at 208.151 kb on + strand, within MPMX19_06935 at 208.152 kb on - strand, within MPMX19_06935 at 208.152 kb on - strand, within MPMX19_06935 at 208.152 kb on - strand, within MPMX19_06935 at 208.152 kb on - strand, within MPMX19_06935 at 208.152 kb on - strand, within MPMX19_06935 at 208.331 kb on + strand, within MPMX19_06935 at 208.334 kb on + strand, within MPMX19_06935 at 208.334 kb on + strand, within MPMX19_06935 at 208.335 kb on - strand, within MPMX19_06935 at 208.335 kb on - strand, within MPMX19_06935 at 208.335 kb on - strand, within MPMX19_06935 at 208.335 kb on - strand, within MPMX19_06935 at 208.346 kb on + strand, within MPMX19_06935 at 208.346 kb on + strand, within MPMX19_06935 at 208.346 kb on + strand, within MPMX19_06935 at 208.536 kb on - strand, within MPMX19_06935 at 208.536 kb on - strand, within MPMX19_06935 at 208.536 kb on - strand, within MPMX19_06935 at 208.577 kb on + strand at 208.577 kb on + strand at 208.577 kb on + strand at 208.577 kb on + strand at 208.578 kb on - strand at 208.578 kb on - strand at 208.578 kb on - strand at 208.578 kb on - strand at 208.686 kb on + strand at 208.687 kb on - strand at 208.687 kb on - strand at 208.687 kb on - strand at 208.746 kb on + strand at 208.746 kb on + strand at 208.746 kb on + strand at 208.746 kb on + strand at 208.746 kb on + strand at 208.746 kb on + strand at 208.746 kb on + strand at 208.746 kb on + strand at 208.746 kb on + strand at 208.746 kb on + strand at 208.746 kb on + strand at 208.746 kb on + strand at 208.746 kb on + strand at 208.747 kb on - strand at 208.747 kb on - strand at 208.747 kb on - strand at 208.747 kb on - strand at 208.747 kb on - strand at 208.747 kb on - strand at 208.747 kb on - strand at 208.747 kb on - strand at 208.747 kb on - strand at 208.747 kb on - strand at 208.747 kb on - strand at 208.747 kb on - strand at 208.747 kb on - strand at 208.747 kb on - strand at 208.863 kb on + strand, within MPMX19_06936 at 208.863 kb on + strand, within MPMX19_06936 at 208.863 kb on + strand, within MPMX19_06936 at 208.863 kb on + strand, within MPMX19_06936 at 208.864 kb on - strand, within MPMX19_06936 at 208.864 kb on - strand, within MPMX19_06936 at 208.864 kb on - strand, within MPMX19_06936 at 208.864 kb on - strand, within MPMX19_06936 at 208.864 kb on - strand, within MPMX19_06936 at 208.864 kb on - strand, within MPMX19_06936 at 209.121 kb on + strand, within MPMX19_06936 at 209.121 kb on + strand, within MPMX19_06936 at 209.121 kb on + strand, within MPMX19_06936 at 209.121 kb on + strand, within MPMX19_06936 at 209.121 kb on + strand, within MPMX19_06936 at 209.121 kb on + strand, within MPMX19_06936 at 209.122 kb on - strand, within MPMX19_06936 at 209.122 kb on - strand, within MPMX19_06936 at 209.122 kb on - strand, within MPMX19_06936 at 209.122 kb on - strand, within MPMX19_06936 at 209.122 kb on - strand, within MPMX19_06936 at 209.322 kb on + strand, within MPMX19_06936 at 209.322 kb on + strand, within MPMX19_06936 at 209.322 kb on + strand, within MPMX19_06936 at 209.323 kb on - strand, within MPMX19_06936 at 209.323 kb on - strand, within MPMX19_06936 at 209.323 kb on - strand, within MPMX19_06936 at 209.323 kb on - strand, within MPMX19_06936 at 209.323 kb on - strand, within MPMX19_06936 at 209.323 kb on - strand, within MPMX19_06936 at 209.467 kb on + strand at 209.467 kb on + strand at 209.468 kb on - strand at 209.468 kb on - strand at 209.479 kb on - strand at 209.635 kb on + strand at 209.635 kb on + strand at 209.635 kb on + strand at 209.635 kb on + strand at 209.635 kb on + strand at 209.635 kb on + strand at 209.635 kb on + strand at 209.635 kb on + strand at 209.635 kb on + strand at 209.635 kb on + strand at 209.635 kb on + strand at 209.635 kb on + strand at 209.636 kb on - strand at 209.636 kb on - strand at 209.636 kb on - strand at 209.636 kb on - strand at 209.636 kb on - strand at 209.636 kb on - strand at 209.636 kb on - strand at 209.636 kb on - strand at 209.636 kb on - strand at 209.636 kb on - strand at 209.636 kb on - strand at 209.636 kb on - strand at 209.638 kb on + strand at 209.638 kb on + strand at 209.639 kb on - strand at 209.639 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 206,809 + +1.1 206,809 + +1.0 206,810 - +1.5 206,810 - -0.0 206,810 - -0.5 206,810 - -0.2 207,115 + MPMX19_06934 0.36 -0.6 207,115 + MPMX19_06934 0.36 +0.7 207,115 + MPMX19_06934 0.36 +0.6 207,115 + MPMX19_06934 0.36 -0.9 207,116 - MPMX19_06934 0.36 -0.6 207,116 - MPMX19_06934 0.36 -0.8 207,116 - MPMX19_06934 0.36 -1.4 207,896 + MPMX19_06935 0.19 -1.9 207,896 + MPMX19_06935 0.19 -1.3 207,896 + MPMX19_06935 0.19 +0.3 207,897 - MPMX19_06935 0.20 -0.1 207,897 - MPMX19_06935 0.20 +0.0 207,897 - MPMX19_06935 0.20 -0.7 207,897 - MPMX19_06935 0.20 -1.2 208,005 - MPMX19_06935 0.31 -2.6 208,151 + MPMX19_06935 0.47 +0.0 208,151 + MPMX19_06935 0.47 -0.8 208,151 + MPMX19_06935 0.47 -1.0 208,151 + MPMX19_06935 0.47 -0.3 208,152 - MPMX19_06935 0.47 -0.3 208,152 - MPMX19_06935 0.47 -1.0 208,152 - MPMX19_06935 0.47 -0.6 208,152 - MPMX19_06935 0.47 +0.0 208,152 - MPMX19_06935 0.47 -0.1 208,331 + MPMX19_06935 0.67 -0.6 208,334 + MPMX19_06935 0.67 -0.4 208,334 + MPMX19_06935 0.67 -2.3 208,335 - MPMX19_06935 0.67 +0.1 208,335 - MPMX19_06935 0.67 -2.3 208,335 - MPMX19_06935 0.67 -0.3 208,335 - MPMX19_06935 0.67 +0.1 208,346 + MPMX19_06935 0.68 -0.9 208,346 + MPMX19_06935 0.68 +0.7 208,346 + MPMX19_06935 0.68 -1.5 208,536 - MPMX19_06935 0.89 -0.6 208,536 - MPMX19_06935 0.89 -0.1 208,536 - MPMX19_06935 0.89 -0.0 208,577 + -2.1 208,577 + +0.8 208,577 + -0.5 208,577 + -1.5 208,578 - -1.3 208,578 - +0.5 208,578 - -1.3 208,578 - +0.3 208,686 + +1.0 208,687 - +0.3 208,687 - -0.5 208,687 - -0.4 208,746 + +0.5 208,746 + -0.5 208,746 + -0.2 208,746 + -0.7 208,746 + -0.0 208,746 + +0.1 208,746 + +0.4 208,746 + -1.2 208,746 + -0.5 208,746 + +0.2 208,746 + +0.5 208,746 + +0.5 208,746 + -0.0 208,747 - +1.0 208,747 - -0.0 208,747 - -0.2 208,747 - -0.9 208,747 - -1.0 208,747 - -0.6 208,747 - +1.0 208,747 - -0.2 208,747 - +0.7 208,747 - +0.7 208,747 - +1.1 208,747 - -2.2 208,747 - -0.7 208,747 - -0.5 208,863 + MPMX19_06936 0.25 +0.7 208,863 + MPMX19_06936 0.25 -0.0 208,863 + MPMX19_06936 0.25 -0.5 208,863 + MPMX19_06936 0.25 +0.6 208,864 - MPMX19_06936 0.25 -0.4 208,864 - MPMX19_06936 0.25 +0.3 208,864 - MPMX19_06936 0.25 +0.2 208,864 - MPMX19_06936 0.25 -1.0 208,864 - MPMX19_06936 0.25 -1.2 208,864 - MPMX19_06936 0.25 -0.3 209,121 + MPMX19_06936 0.61 +0.8 209,121 + MPMX19_06936 0.61 -0.6 209,121 + MPMX19_06936 0.61 +0.1 209,121 + MPMX19_06936 0.61 -0.8 209,121 + MPMX19_06936 0.61 -0.8 209,121 + MPMX19_06936 0.61 +0.4 209,122 - MPMX19_06936 0.61 -0.5 209,122 - MPMX19_06936 0.61 -0.5 209,122 - MPMX19_06936 0.61 -0.9 209,122 - MPMX19_06936 0.61 +0.2 209,122 - MPMX19_06936 0.61 -1.9 209,322 + MPMX19_06936 0.89 -1.0 209,322 + MPMX19_06936 0.89 -1.3 209,322 + MPMX19_06936 0.89 -1.3 209,323 - MPMX19_06936 0.89 +1.1 209,323 - MPMX19_06936 0.89 -0.3 209,323 - MPMX19_06936 0.89 -0.6 209,323 - MPMX19_06936 0.89 +0.9 209,323 - MPMX19_06936 0.89 -0.5 209,323 - MPMX19_06936 0.89 -0.0 209,467 + +0.5 209,467 + +0.8 209,468 - -0.5 209,468 - +0.1 209,479 - -0.0 209,635 + -0.2 209,635 + -0.1 209,635 + -0.8 209,635 + -1.5 209,635 + +0.1 209,635 + -0.4 209,635 + +0.7 209,635 + +0.9 209,635 + -0.5 209,635 + -1.6 209,635 + -1.1 209,635 + -0.6 209,636 - -0.0 209,636 - -0.7 209,636 - -1.6 209,636 - -0.5 209,636 - +0.7 209,636 - +0.0 209,636 - +1.2 209,636 - +0.7 209,636 - -0.0 209,636 - +0.7 209,636 - +0.3 209,636 - -0.0 209,638 + +0.4 209,638 + -1.2 209,639 - -1.3 209,639 - +0.5
Or see this region's nucleotide sequence