Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06887 and MPMX19_06888 are separated by 2 nucleotides MPMX19_06888 and MPMX19_06889 are separated by 9 nucleotides
MPMX19_06887: MPMX19_06887 - Adenine deaminase, at 158,829 to 160,508
_06887
MPMX19_06888: MPMX19_06888 - hypothetical protein, at 160,511 to 161,962
_06888
MPMX19_06889: MPMX19_06889 - Dimethyl sulfoxide/trimethylamine N-oxide reductase, at 161,972 to 164,272
_06889
Position (kb) 160
161
162 Strain fitness (log2 ratio) -2
-1
0
1 at 159.544 kb on - strand, within MPMX19_06887 at 160.019 kb on + strand, within MPMX19_06887 at 160.020 kb on - strand, within MPMX19_06887 at 160.661 kb on + strand, within MPMX19_06888 at 160.661 kb on + strand, within MPMX19_06888 at 160.662 kb on - strand, within MPMX19_06888 at 160.662 kb on - strand, within MPMX19_06888 at 160.856 kb on + strand, within MPMX19_06888 at 161.681 kb on + strand, within MPMX19_06888 at 161.681 kb on + strand, within MPMX19_06888 at 161.681 kb on + strand, within MPMX19_06888 at 161.681 kb on + strand, within MPMX19_06888 at 161.681 kb on + strand, within MPMX19_06888 at 161.681 kb on + strand, within MPMX19_06888 at 161.682 kb on - strand, within MPMX19_06888 at 161.682 kb on - strand, within MPMX19_06888 at 161.682 kb on - strand, within MPMX19_06888 at 161.682 kb on - strand, within MPMX19_06888 at 161.682 kb on - strand, within MPMX19_06888 at 161.858 kb on + strand at 161.858 kb on + strand at 161.858 kb on + strand at 161.858 kb on + strand at 161.858 kb on + strand at 161.858 kb on + strand at 161.859 kb on - strand at 161.859 kb on - strand at 161.859 kb on - strand at 161.859 kb on - strand at 161.859 kb on - strand at 161.859 kb on - strand at 161.859 kb on - strand at 161.859 kb on - strand at 161.859 kb on - strand at 161.859 kb on - strand at 161.859 kb on - strand at 161.859 kb on - strand at 162.168 kb on + strand at 162.168 kb on + strand at 162.169 kb on - strand at 162.370 kb on - strand, within MPMX19_06889 at 162.370 kb on - strand, within MPMX19_06889 at 162.370 kb on - strand, within MPMX19_06889 at 162.370 kb on - strand, within MPMX19_06889 at 162.370 kb on - strand, within MPMX19_06889 at 162.370 kb on - strand, within MPMX19_06889
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 159,544 - MPMX19_06887 0.43 +0.5 160,019 + MPMX19_06887 0.71 -0.0 160,020 - MPMX19_06887 0.71 -0.0 160,661 + MPMX19_06888 0.10 -0.6 160,661 + MPMX19_06888 0.10 -1.4 160,662 - MPMX19_06888 0.10 -0.9 160,662 - MPMX19_06888 0.10 -0.2 160,856 + MPMX19_06888 0.24 +0.1 161,681 + MPMX19_06888 0.81 +0.5 161,681 + MPMX19_06888 0.81 -0.5 161,681 + MPMX19_06888 0.81 +1.0 161,681 + MPMX19_06888 0.81 +0.5 161,681 + MPMX19_06888 0.81 +0.3 161,681 + MPMX19_06888 0.81 -0.7 161,682 - MPMX19_06888 0.81 +0.7 161,682 - MPMX19_06888 0.81 +1.5 161,682 - MPMX19_06888 0.81 +0.9 161,682 - MPMX19_06888 0.81 +1.1 161,682 - MPMX19_06888 0.81 +0.1 161,858 + +0.4 161,858 + -1.0 161,858 + -0.3 161,858 + +0.1 161,858 + -1.1 161,858 + +0.1 161,859 - +0.9 161,859 - +1.1 161,859 - +0.3 161,859 - +1.0 161,859 - +0.9 161,859 - -1.6 161,859 - +0.2 161,859 - +0.3 161,859 - -1.5 161,859 - -0.3 161,859 - -0.8 161,859 - -0.6 162,168 + +0.5 162,168 + +0.4 162,169 - +0.4 162,370 - MPMX19_06889 0.17 -0.5 162,370 - MPMX19_06889 0.17 -0.0 162,370 - MPMX19_06889 0.17 +1.1 162,370 - MPMX19_06889 0.17 +0.3 162,370 - MPMX19_06889 0.17 -2.2 162,370 - MPMX19_06889 0.17 +1.0
Or see this region's nucleotide sequence