Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06755 and MPMX19_06756 are separated by 44 nucleotides MPMX19_06756 and MPMX19_06757 are separated by 14 nucleotides MPMX19_06757 and MPMX19_06758 are separated by 26 nucleotides MPMX19_06758 and MPMX19_06759 overlap by 4 nucleotides
MPMX19_06755: MPMX19_06755 - Hypotaurine/taurine--pyruvate aminotransferase, at 21,002 to 22,399
_06755
MPMX19_06756: MPMX19_06756 - Serine 3-dehydrogenase, at 22,444 to 23,232
_06756
MPMX19_06757: MPMX19_06757 - hypothetical protein, at 23,247 to 24,002
_06757
MPMX19_06758: MPMX19_06758 - Putative aliphatic sulfonates transport permease protein SsuC, at 24,029 to 24,910
_06758
MPMX19_06759: MPMX19_06759 - Taurine import ATP-binding protein TauB, at 24,907 to 25,710
_06759
Position (kb) 23
24
25 Strain fitness (log2 ratio) -2
-1
0
1 at 22.412 kb on - strand at 22.757 kb on + strand, within MPMX19_06756 at 23.194 kb on + strand at 23.226 kb on + strand at 23.226 kb on + strand at 23.226 kb on + strand at 23.227 kb on - strand at 23.227 kb on - strand at 23.932 kb on + strand at 23.932 kb on + strand at 23.932 kb on + strand at 23.933 kb on - strand at 23.933 kb on - strand at 24.466 kb on - strand, within MPMX19_06758 at 24.466 kb on - strand, within MPMX19_06758 at 24.466 kb on - strand, within MPMX19_06758
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 22,412 - -0.5 22,757 + MPMX19_06756 0.40 -0.5 23,194 + -0.6 23,226 + +0.1 23,226 + -1.9 23,226 + -1.0 23,227 - +1.1 23,227 - +0.8 23,932 + +0.1 23,932 + -0.3 23,932 + +0.0 23,933 - -1.9 23,933 - +0.8 24,466 - MPMX19_06758 0.50 -1.9 24,466 - MPMX19_06758 0.50 -2.3 24,466 - MPMX19_06758 0.50 -2.3
Or see this region's nucleotide sequence