Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06532 and MPMX19_06533 are separated by 90 nucleotides MPMX19_06533 and MPMX19_06534 are separated by 373 nucleotides MPMX19_06534 and MPMX19_06535 are separated by 8 nucleotides
MPMX19_06532: MPMX19_06532 - Validamycin A dioxygenase, at 319,891 to 320,952
_06532
MPMX19_06533: MPMX19_06533 - hypothetical protein, at 321,043 to 321,234
_06533
MPMX19_06534: MPMX19_06534 - Putative amino-acid ABC transporter-binding protein YhdW, at 321,608 to 322,678
_06534
MPMX19_06535: MPMX19_06535 - hypothetical protein, at 322,687 to 323,856
_06535
Position (kb) 321
322
323 Strain fitness (log2 ratio) -2
-1
0
1 at 320.687 kb on + strand, within MPMX19_06532 at 320.688 kb on - strand, within MPMX19_06532 at 320.817 kb on - strand, within MPMX19_06532 at 320.817 kb on - strand, within MPMX19_06532 at 320.817 kb on - strand, within MPMX19_06532 at 320.817 kb on - strand, within MPMX19_06532 at 320.817 kb on - strand, within MPMX19_06532 at 320.817 kb on - strand, within MPMX19_06532 at 320.817 kb on - strand, within MPMX19_06532 at 320.817 kb on - strand, within MPMX19_06532 at 320.817 kb on - strand, within MPMX19_06532 at 320.817 kb on - strand, within MPMX19_06532 at 320.817 kb on - strand, within MPMX19_06532 at 320.817 kb on - strand, within MPMX19_06532 at 320.817 kb on - strand, within MPMX19_06532 at 320.817 kb on - strand, within MPMX19_06532 at 321.237 kb on + strand at 321.237 kb on + strand at 321.248 kb on + strand at 321.248 kb on + strand at 321.248 kb on + strand at 321.248 kb on + strand at 321.248 kb on + strand at 321.248 kb on + strand at 321.249 kb on - strand at 321.249 kb on - strand at 321.249 kb on - strand at 321.249 kb on - strand at 321.249 kb on - strand at 321.249 kb on - strand at 321.249 kb on - strand at 321.249 kb on - strand at 321.249 kb on - strand at 321.268 kb on - strand at 322.050 kb on + strand, within MPMX19_06534 at 322.298 kb on + strand, within MPMX19_06534 at 322.298 kb on + strand, within MPMX19_06534 at 322.298 kb on + strand, within MPMX19_06534 at 322.538 kb on + strand, within MPMX19_06534 at 322.538 kb on + strand, within MPMX19_06534 at 322.566 kb on - strand, within MPMX19_06534 at 322.566 kb on - strand, within MPMX19_06534 at 322.658 kb on + strand at 322.658 kb on + strand at 323.057 kb on + strand, within MPMX19_06535 at 323.058 kb on - strand, within MPMX19_06535 at 323.066 kb on - strand, within MPMX19_06535 at 323.066 kb on - strand, within MPMX19_06535 at 323.066 kb on - strand, within MPMX19_06535 at 323.066 kb on - strand, within MPMX19_06535 at 323.066 kb on - strand, within MPMX19_06535 at 323.066 kb on - strand, within MPMX19_06535 at 323.066 kb on - strand, within MPMX19_06535
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 320,687 + MPMX19_06532 0.75 -0.5 320,688 - MPMX19_06532 0.75 +0.4 320,817 - MPMX19_06532 0.87 +0.7 320,817 - MPMX19_06532 0.87 -0.3 320,817 - MPMX19_06532 0.87 -0.8 320,817 - MPMX19_06532 0.87 +0.2 320,817 - MPMX19_06532 0.87 +0.1 320,817 - MPMX19_06532 0.87 -0.6 320,817 - MPMX19_06532 0.87 -0.1 320,817 - MPMX19_06532 0.87 -0.2 320,817 - MPMX19_06532 0.87 -0.4 320,817 - MPMX19_06532 0.87 -0.3 320,817 - MPMX19_06532 0.87 -1.5 320,817 - MPMX19_06532 0.87 -0.0 320,817 - MPMX19_06532 0.87 +0.3 320,817 - MPMX19_06532 0.87 -1.4 321,237 + -0.3 321,237 + -0.1 321,248 + -1.9 321,248 + +0.5 321,248 + -0.5 321,248 + -0.4 321,248 + -0.6 321,248 + +0.5 321,249 - -1.2 321,249 - +0.7 321,249 - -0.4 321,249 - +0.0 321,249 - -1.4 321,249 - -0.3 321,249 - +0.2 321,249 - +1.2 321,249 - +0.0 321,268 - -0.2 322,050 + MPMX19_06534 0.41 -1.9 322,298 + MPMX19_06534 0.64 -1.1 322,298 + MPMX19_06534 0.64 -0.5 322,298 + MPMX19_06534 0.64 -1.6 322,538 + MPMX19_06534 0.87 -1.8 322,538 + MPMX19_06534 0.87 +0.7 322,566 - MPMX19_06534 0.89 -0.5 322,566 - MPMX19_06534 0.89 -0.4 322,658 + -0.6 322,658 + -1.6 323,057 + MPMX19_06535 0.32 -0.7 323,058 - MPMX19_06535 0.32 -0.0 323,066 - MPMX19_06535 0.32 +0.1 323,066 - MPMX19_06535 0.32 -2.3 323,066 - MPMX19_06535 0.32 +0.3 323,066 - MPMX19_06535 0.32 +0.1 323,066 - MPMX19_06535 0.32 -0.1 323,066 - MPMX19_06535 0.32 -0.1 323,066 - MPMX19_06535 0.32 +0.3
Or see this region's nucleotide sequence