Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06417 and MPMX19_06418 are separated by 101 nucleotides MPMX19_06418 and MPMX19_06419 are separated by 512 nucleotides
MPMX19_06417: MPMX19_06417 - Transcriptional regulatory protein OmpR, at 187,325 to 188,038
_06417
MPMX19_06418: MPMX19_06418 - Adaptive-response sensory-kinase SasA, at 188,140 to 189,387
_06418
MPMX19_06419: MPMX19_06419 - IS110 family transposase ISHne3, at 189,900 to 190,586
_06419
Position (kb) 188
189
190 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 187.238 kb on + strand at 187.400 kb on + strand, within MPMX19_06417 at 187.401 kb on - strand, within MPMX19_06417 at 187.401 kb on - strand, within MPMX19_06417 at 187.428 kb on - strand, within MPMX19_06417 at 187.428 kb on - strand, within MPMX19_06417 at 187.428 kb on - strand, within MPMX19_06417 at 187.444 kb on + strand, within MPMX19_06417 at 187.444 kb on + strand, within MPMX19_06417 at 187.444 kb on + strand, within MPMX19_06417 at 187.444 kb on + strand, within MPMX19_06417 at 187.445 kb on - strand, within MPMX19_06417 at 187.445 kb on - strand, within MPMX19_06417 at 187.445 kb on - strand, within MPMX19_06417 at 187.445 kb on - strand, within MPMX19_06417 at 187.445 kb on - strand, within MPMX19_06417 at 187.445 kb on - strand, within MPMX19_06417 at 187.616 kb on + strand, within MPMX19_06417 at 187.617 kb on - strand, within MPMX19_06417 at 187.617 kb on - strand, within MPMX19_06417 at 187.617 kb on - strand, within MPMX19_06417 at 187.617 kb on - strand, within MPMX19_06417 at 187.750 kb on + strand, within MPMX19_06417 at 187.751 kb on - strand, within MPMX19_06417 at 187.817 kb on + strand, within MPMX19_06417 at 187.960 kb on + strand, within MPMX19_06417 at 188.006 kb on + strand at 188.006 kb on + strand at 188.006 kb on + strand at 188.006 kb on + strand at 188.006 kb on + strand at 188.006 kb on + strand at 188.006 kb on + strand at 188.006 kb on + strand at 188.007 kb on - strand at 188.007 kb on - strand at 188.007 kb on - strand at 188.007 kb on - strand at 188.007 kb on - strand at 188.007 kb on - strand at 188.007 kb on - strand at 188.007 kb on - strand at 188.081 kb on + strand at 188.081 kb on + strand at 188.082 kb on - strand at 188.082 kb on - strand at 188.134 kb on + strand at 188.139 kb on + strand at 188.139 kb on + strand at 188.139 kb on + strand at 188.321 kb on - strand, within MPMX19_06418 at 188.321 kb on - strand, within MPMX19_06418 at 188.321 kb on - strand, within MPMX19_06418 at 188.321 kb on - strand, within MPMX19_06418 at 188.345 kb on + strand, within MPMX19_06418 at 188.346 kb on - strand, within MPMX19_06418 at 188.403 kb on - strand, within MPMX19_06418 at 188.585 kb on + strand, within MPMX19_06418 at 188.586 kb on - strand, within MPMX19_06418 at 188.586 kb on - strand, within MPMX19_06418 at 188.586 kb on - strand, within MPMX19_06418 at 188.586 kb on - strand, within MPMX19_06418 at 188.586 kb on - strand, within MPMX19_06418 at 188.621 kb on + strand, within MPMX19_06418 at 188.622 kb on - strand, within MPMX19_06418 at 188.702 kb on + strand, within MPMX19_06418 at 188.702 kb on + strand, within MPMX19_06418 at 188.702 kb on + strand, within MPMX19_06418 at 188.743 kb on - strand, within MPMX19_06418 at 188.754 kb on - strand, within MPMX19_06418 at 188.754 kb on - strand, within MPMX19_06418 at 188.836 kb on + strand, within MPMX19_06418 at 188.836 kb on + strand, within MPMX19_06418 at 188.900 kb on + strand, within MPMX19_06418 at 188.900 kb on + strand, within MPMX19_06418 at 188.900 kb on + strand, within MPMX19_06418 at 188.900 kb on + strand, within MPMX19_06418 at 188.932 kb on - strand, within MPMX19_06418 at 188.975 kb on + strand, within MPMX19_06418 at 188.976 kb on - strand, within MPMX19_06418 at 188.976 kb on - strand, within MPMX19_06418 at 189.022 kb on + strand, within MPMX19_06418 at 189.022 kb on + strand, within MPMX19_06418 at 189.022 kb on + strand, within MPMX19_06418 at 189.023 kb on - strand, within MPMX19_06418 at 189.023 kb on - strand, within MPMX19_06418 at 189.023 kb on - strand, within MPMX19_06418 at 189.032 kb on + strand, within MPMX19_06418 at 189.032 kb on + strand, within MPMX19_06418 at 189.033 kb on - strand, within MPMX19_06418 at 189.033 kb on - strand, within MPMX19_06418 at 189.212 kb on + strand, within MPMX19_06418 at 189.212 kb on + strand, within MPMX19_06418 at 189.212 kb on + strand, within MPMX19_06418 at 189.226 kb on + strand, within MPMX19_06418 at 189.227 kb on - strand, within MPMX19_06418 at 189.227 kb on - strand, within MPMX19_06418 at 189.265 kb on + strand at 189.318 kb on + strand at 189.318 kb on + strand at 189.318 kb on + strand at 189.323 kb on + strand at 189.376 kb on - strand at 189.377 kb on + strand at 189.432 kb on + strand at 189.563 kb on + strand at 189.605 kb on + strand at 189.605 kb on + strand at 189.605 kb on + strand at 189.605 kb on + strand at 189.606 kb on - strand at 189.606 kb on - strand at 189.606 kb on - strand at 189.635 kb on + strand at 189.635 kb on + strand at 189.635 kb on + strand at 189.635 kb on + strand at 189.636 kb on - strand at 189.636 kb on - strand at 189.651 kb on + strand at 189.652 kb on - strand at 189.652 kb on - strand at 189.725 kb on + strand at 189.725 kb on + strand at 189.725 kb on + strand at 189.725 kb on + strand at 189.725 kb on + strand at 189.726 kb on - strand at 189.726 kb on - strand at 189.726 kb on - strand at 189.901 kb on + strand at 189.901 kb on + strand at 189.901 kb on + strand at 189.901 kb on + strand at 189.901 kb on + strand at 189.901 kb on + strand at 189.901 kb on + strand at 189.902 kb on - strand at 189.902 kb on - strand at 189.902 kb on - strand at 189.902 kb on - strand at 190.048 kb on + strand, within MPMX19_06419 at 190.048 kb on + strand, within MPMX19_06419 at 190.048 kb on + strand, within MPMX19_06419 at 190.048 kb on + strand, within MPMX19_06419 at 190.049 kb on - strand, within MPMX19_06419 at 190.049 kb on - strand, within MPMX19_06419 at 190.118 kb on - strand, within MPMX19_06419
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 187,238 + +1.4 187,400 + MPMX19_06417 0.11 -0.6 187,401 - MPMX19_06417 0.11 -0.9 187,401 - MPMX19_06417 0.11 -1.7 187,428 - MPMX19_06417 0.14 -2.0 187,428 - MPMX19_06417 0.14 -0.3 187,428 - MPMX19_06417 0.14 -1.0 187,444 + MPMX19_06417 0.17 +0.1 187,444 + MPMX19_06417 0.17 -1.3 187,444 + MPMX19_06417 0.17 -0.9 187,444 + MPMX19_06417 0.17 -1.0 187,445 - MPMX19_06417 0.17 -0.5 187,445 - MPMX19_06417 0.17 -1.2 187,445 - MPMX19_06417 0.17 -1.5 187,445 - MPMX19_06417 0.17 +2.1 187,445 - MPMX19_06417 0.17 -0.2 187,445 - MPMX19_06417 0.17 +0.5 187,616 + MPMX19_06417 0.41 +0.8 187,617 - MPMX19_06417 0.41 -0.3 187,617 - MPMX19_06417 0.41 -0.1 187,617 - MPMX19_06417 0.41 +0.3 187,617 - MPMX19_06417 0.41 -0.9 187,750 + MPMX19_06417 0.60 -1.0 187,751 - MPMX19_06417 0.60 +0.1 187,817 + MPMX19_06417 0.69 -0.6 187,960 + MPMX19_06417 0.89 -0.1 188,006 + -0.8 188,006 + -1.1 188,006 + +0.2 188,006 + -0.4 188,006 + +0.2 188,006 + +0.2 188,006 + -0.7 188,006 + -0.0 188,007 - -1.2 188,007 - +0.1 188,007 - +0.4 188,007 - -0.5 188,007 - -0.1 188,007 - +0.7 188,007 - -1.3 188,007 - +1.7 188,081 + +1.1 188,081 + +0.4 188,082 - -0.3 188,082 - -1.3 188,134 + -0.9 188,139 + -0.1 188,139 + -1.8 188,139 + +0.1 188,321 - MPMX19_06418 0.15 -0.6 188,321 - MPMX19_06418 0.15 -0.6 188,321 - MPMX19_06418 0.15 +1.4 188,321 - MPMX19_06418 0.15 -0.9 188,345 + MPMX19_06418 0.16 +0.1 188,346 - MPMX19_06418 0.17 -0.2 188,403 - MPMX19_06418 0.21 -0.3 188,585 + MPMX19_06418 0.36 -0.3 188,586 - MPMX19_06418 0.36 -1.0 188,586 - MPMX19_06418 0.36 -1.5 188,586 - MPMX19_06418 0.36 -2.2 188,586 - MPMX19_06418 0.36 -0.5 188,586 - MPMX19_06418 0.36 +0.4 188,621 + MPMX19_06418 0.39 -1.2 188,622 - MPMX19_06418 0.39 -0.3 188,702 + MPMX19_06418 0.45 -0.2 188,702 + MPMX19_06418 0.45 -0.9 188,702 + MPMX19_06418 0.45 -2.8 188,743 - MPMX19_06418 0.48 -1.0 188,754 - MPMX19_06418 0.49 +0.2 188,754 - MPMX19_06418 0.49 -1.6 188,836 + MPMX19_06418 0.56 +0.1 188,836 + MPMX19_06418 0.56 -1.1 188,900 + MPMX19_06418 0.61 -2.7 188,900 + MPMX19_06418 0.61 -0.4 188,900 + MPMX19_06418 0.61 +0.4 188,900 + MPMX19_06418 0.61 +0.4 188,932 - MPMX19_06418 0.63 -1.4 188,975 + MPMX19_06418 0.67 -0.9 188,976 - MPMX19_06418 0.67 -1.6 188,976 - MPMX19_06418 0.67 -0.7 189,022 + MPMX19_06418 0.71 +0.5 189,022 + MPMX19_06418 0.71 -0.6 189,022 + MPMX19_06418 0.71 +0.3 189,023 - MPMX19_06418 0.71 -0.1 189,023 - MPMX19_06418 0.71 -1.9 189,023 - MPMX19_06418 0.71 -1.2 189,032 + MPMX19_06418 0.71 -1.4 189,032 + MPMX19_06418 0.71 -0.9 189,033 - MPMX19_06418 0.72 +0.9 189,033 - MPMX19_06418 0.72 -0.3 189,212 + MPMX19_06418 0.86 +0.0 189,212 + MPMX19_06418 0.86 -1.3 189,212 + MPMX19_06418 0.86 -1.3 189,226 + MPMX19_06418 0.87 +0.5 189,227 - MPMX19_06418 0.87 -0.9 189,227 - MPMX19_06418 0.87 -0.3 189,265 + -1.3 189,318 + -0.4 189,318 + +1.2 189,318 + +0.2 189,323 + +0.1 189,376 - -1.1 189,377 + -0.8 189,432 + +0.7 189,563 + -0.2 189,605 + -0.0 189,605 + +0.1 189,605 + -1.5 189,605 + -0.6 189,606 - -0.1 189,606 - +0.2 189,606 - -0.3 189,635 + -0.2 189,635 + -2.2 189,635 + +1.5 189,635 + -0.3 189,636 - +0.2 189,636 - +1.7 189,651 + -0.3 189,652 - -0.3 189,652 - +0.5 189,725 + -1.4 189,725 + -0.8 189,725 + +0.3 189,725 + -0.5 189,725 + -2.1 189,726 - +1.2 189,726 - -0.1 189,726 - +0.8 189,901 + -1.3 189,901 + +0.7 189,901 + -1.1 189,901 + +0.5 189,901 + +1.2 189,901 + -1.1 189,901 + +0.1 189,902 - -0.5 189,902 - +0.3 189,902 - +0.2 189,902 - -1.7 190,048 + MPMX19_06419 0.22 +0.7 190,048 + MPMX19_06419 0.22 -1.2 190,048 + MPMX19_06419 0.22 -0.4 190,048 + MPMX19_06419 0.22 -0.3 190,049 - MPMX19_06419 0.22 -0.2 190,049 - MPMX19_06419 0.22 -0.2 190,118 - MPMX19_06419 0.32 -0.8
Or see this region's nucleotide sequence