Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05857 and MPMX19_05858 overlap by 1 nucleotides MPMX19_05858 and MPMX19_05859 are separated by 4 nucleotides
MPMX19_05857: MPMX19_05857 - 3-oxoadipate CoA-transferase subunit A, at 592,334 to 593,206
_05857
MPMX19_05858: MPMX19_05858 - 3-oxoadipate CoA-transferase subunit B, at 593,206 to 594,000
_05858
MPMX19_05859: MPMX19_05859 - Beta-ketoadipyl-CoA thiolase, at 594,005 to 595,204
_05859
Position (kb) 593
594
595 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 592.333 kb on + strand at 592.333 kb on + strand at 592.333 kb on + strand at 592.334 kb on - strand at 592.502 kb on + strand, within MPMX19_05857 at 592.502 kb on + strand, within MPMX19_05857 at 592.502 kb on + strand, within MPMX19_05857 at 592.502 kb on + strand, within MPMX19_05857 at 592.502 kb on + strand, within MPMX19_05857 at 592.502 kb on + strand, within MPMX19_05857 at 592.502 kb on + strand, within MPMX19_05857 at 592.502 kb on + strand, within MPMX19_05857 at 592.503 kb on - strand, within MPMX19_05857 at 592.503 kb on - strand, within MPMX19_05857 at 592.503 kb on - strand, within MPMX19_05857 at 592.503 kb on - strand, within MPMX19_05857 at 592.503 kb on - strand, within MPMX19_05857 at 592.664 kb on + strand, within MPMX19_05857 at 592.664 kb on + strand, within MPMX19_05857 at 592.664 kb on + strand, within MPMX19_05857 at 592.664 kb on + strand, within MPMX19_05857 at 592.665 kb on - strand, within MPMX19_05857 at 592.665 kb on - strand, within MPMX19_05857 at 592.665 kb on - strand, within MPMX19_05857 at 592.665 kb on - strand, within MPMX19_05857 at 592.665 kb on - strand, within MPMX19_05857 at 592.665 kb on - strand, within MPMX19_05857 at 592.665 kb on - strand, within MPMX19_05857 at 592.665 kb on - strand, within MPMX19_05857 at 592.665 kb on - strand, within MPMX19_05857 at 592.710 kb on - strand, within MPMX19_05857 at 592.710 kb on - strand, within MPMX19_05857 at 592.710 kb on - strand, within MPMX19_05857 at 592.977 kb on - strand, within MPMX19_05857 at 593.019 kb on - strand, within MPMX19_05857 at 593.019 kb on - strand, within MPMX19_05857 at 593.019 kb on - strand, within MPMX19_05857 at 593.027 kb on + strand, within MPMX19_05857 at 593.027 kb on + strand, within MPMX19_05857 at 593.028 kb on - strand, within MPMX19_05857 at 593.028 kb on - strand, within MPMX19_05857 at 593.028 kb on - strand, within MPMX19_05857 at 593.028 kb on - strand, within MPMX19_05857 at 593.039 kb on + strand, within MPMX19_05857 at 593.039 kb on + strand, within MPMX19_05857 at 593.040 kb on - strand, within MPMX19_05857 at 593.063 kb on + strand, within MPMX19_05857 at 593.063 kb on + strand, within MPMX19_05857 at 593.063 kb on + strand, within MPMX19_05857 at 593.063 kb on + strand, within MPMX19_05857 at 593.063 kb on + strand, within MPMX19_05857 at 593.063 kb on + strand, within MPMX19_05857 at 593.063 kb on + strand, within MPMX19_05857 at 593.063 kb on + strand, within MPMX19_05857 at 593.063 kb on + strand, within MPMX19_05857 at 593.063 kb on + strand, within MPMX19_05857 at 593.063 kb on + strand, within MPMX19_05857 at 593.063 kb on + strand, within MPMX19_05857 at 593.063 kb on + strand, within MPMX19_05857 at 593.063 kb on + strand, within MPMX19_05857 at 593.063 kb on + strand, within MPMX19_05857 at 593.063 kb on + strand, within MPMX19_05857 at 593.063 kb on + strand, within MPMX19_05857 at 593.063 kb on + strand, within MPMX19_05857 at 593.064 kb on - strand, within MPMX19_05857 at 593.064 kb on - strand, within MPMX19_05857 at 593.064 kb on - strand, within MPMX19_05857 at 593.064 kb on - strand, within MPMX19_05857 at 593.064 kb on - strand, within MPMX19_05857 at 593.064 kb on - strand, within MPMX19_05857 at 593.064 kb on - strand, within MPMX19_05857 at 593.064 kb on - strand, within MPMX19_05857 at 593.064 kb on - strand, within MPMX19_05857 at 593.064 kb on - strand, within MPMX19_05857 at 593.064 kb on - strand, within MPMX19_05857 at 593.064 kb on - strand, within MPMX19_05857 at 593.064 kb on - strand, within MPMX19_05857 at 593.064 kb on - strand, within MPMX19_05857 at 593.064 kb on - strand, within MPMX19_05857 at 593.064 kb on - strand, within MPMX19_05857 at 593.064 kb on - strand, within MPMX19_05857 at 593.064 kb on - strand, within MPMX19_05857 at 593.064 kb on - strand, within MPMX19_05857 at 593.064 kb on - strand, within MPMX19_05857 at 593.064 kb on - strand, within MPMX19_05857 at 593.365 kb on + strand, within MPMX19_05858 at 593.365 kb on + strand, within MPMX19_05858 at 593.365 kb on + strand, within MPMX19_05858 at 593.365 kb on + strand, within MPMX19_05858 at 593.366 kb on - strand, within MPMX19_05858 at 593.366 kb on - strand, within MPMX19_05858 at 593.366 kb on - strand, within MPMX19_05858 at 593.366 kb on - strand, within MPMX19_05858 at 593.366 kb on - strand, within MPMX19_05858 at 593.366 kb on - strand, within MPMX19_05858 at 593.366 kb on - strand, within MPMX19_05858 at 593.366 kb on - strand, within MPMX19_05858 at 593.477 kb on - strand, within MPMX19_05858 at 593.569 kb on + strand, within MPMX19_05858 at 593.569 kb on + strand, within MPMX19_05858 at 593.569 kb on + strand, within MPMX19_05858 at 593.569 kb on + strand, within MPMX19_05858 at 593.569 kb on + strand, within MPMX19_05858 at 593.569 kb on + strand, within MPMX19_05858 at 593.569 kb on + strand, within MPMX19_05858 at 593.570 kb on - strand, within MPMX19_05858 at 593.570 kb on - strand, within MPMX19_05858 at 593.570 kb on - strand, within MPMX19_05858 at 593.570 kb on - strand, within MPMX19_05858 at 593.570 kb on - strand, within MPMX19_05858 at 593.570 kb on - strand, within MPMX19_05858 at 593.643 kb on + strand, within MPMX19_05858 at 593.643 kb on + strand, within MPMX19_05858 at 593.643 kb on + strand, within MPMX19_05858 at 593.643 kb on + strand, within MPMX19_05858 at 593.643 kb on + strand, within MPMX19_05858 at 593.643 kb on + strand, within MPMX19_05858 at 593.643 kb on + strand, within MPMX19_05858 at 593.644 kb on - strand, within MPMX19_05858 at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.004 kb on - strand at 594.004 kb on - strand at 594.004 kb on - strand at 594.004 kb on - strand at 594.004 kb on - strand at 594.004 kb on - strand at 594.004 kb on - strand at 594.004 kb on - strand at 594.004 kb on - strand at 594.004 kb on - strand at 594.004 kb on - strand at 594.004 kb on - strand at 594.004 kb on - strand at 594.004 kb on - strand at 594.004 kb on - strand at 594.004 kb on - strand at 594.004 kb on - strand at 594.004 kb on - strand at 594.004 kb on - strand at 594.017 kb on + strand at 594.017 kb on + strand at 594.018 kb on - strand at 594.018 kb on - strand at 594.018 kb on - strand at 594.018 kb on - strand at 594.018 kb on - strand at 594.018 kb on - strand at 594.018 kb on - strand at 594.053 kb on + strand at 594.053 kb on + strand at 594.054 kb on - strand at 594.164 kb on + strand, within MPMX19_05859 at 594.164 kb on + strand, within MPMX19_05859 at 594.164 kb on + strand, within MPMX19_05859 at 594.164 kb on + strand, within MPMX19_05859 at 594.164 kb on + strand, within MPMX19_05859 at 594.164 kb on + strand, within MPMX19_05859 at 594.164 kb on + strand, within MPMX19_05859 at 594.164 kb on + strand, within MPMX19_05859 at 594.164 kb on + strand, within MPMX19_05859 at 594.164 kb on + strand, within MPMX19_05859 at 594.164 kb on + strand, within MPMX19_05859 at 594.164 kb on + strand, within MPMX19_05859 at 594.164 kb on + strand, within MPMX19_05859 at 594.164 kb on + strand, within MPMX19_05859 at 594.164 kb on + strand, within MPMX19_05859 at 594.165 kb on - strand, within MPMX19_05859 at 594.165 kb on - strand, within MPMX19_05859 at 594.165 kb on - strand, within MPMX19_05859 at 594.165 kb on - strand, within MPMX19_05859 at 594.165 kb on - strand, within MPMX19_05859 at 594.165 kb on - strand, within MPMX19_05859 at 594.165 kb on - strand, within MPMX19_05859 at 594.165 kb on - strand, within MPMX19_05859 at 594.165 kb on - strand, within MPMX19_05859 at 594.476 kb on + strand, within MPMX19_05859 at 594.476 kb on + strand, within MPMX19_05859 at 594.476 kb on + strand, within MPMX19_05859 at 594.477 kb on - strand, within MPMX19_05859 at 594.477 kb on - strand, within MPMX19_05859 at 594.477 kb on - strand, within MPMX19_05859 at 594.477 kb on - strand, within MPMX19_05859 at 594.477 kb on - strand, within MPMX19_05859 at 594.477 kb on - strand, within MPMX19_05859 at 594.477 kb on - strand, within MPMX19_05859 at 594.477 kb on - strand, within MPMX19_05859 at 594.477 kb on - strand, within MPMX19_05859 at 594.477 kb on - strand, within MPMX19_05859
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 592,333 + +0.9 592,333 + +1.6 592,333 + +0.2 592,334 - -0.1 592,502 + MPMX19_05857 0.19 +0.0 592,502 + MPMX19_05857 0.19 -0.5 592,502 + MPMX19_05857 0.19 +0.0 592,502 + MPMX19_05857 0.19 +0.6 592,502 + MPMX19_05857 0.19 -1.0 592,502 + MPMX19_05857 0.19 -0.6 592,502 + MPMX19_05857 0.19 +0.0 592,502 + MPMX19_05857 0.19 -0.7 592,503 - MPMX19_05857 0.19 -0.7 592,503 - MPMX19_05857 0.19 +0.7 592,503 - MPMX19_05857 0.19 +0.9 592,503 - MPMX19_05857 0.19 +0.9 592,503 - MPMX19_05857 0.19 -0.1 592,664 + MPMX19_05857 0.38 -1.0 592,664 + MPMX19_05857 0.38 +0.2 592,664 + MPMX19_05857 0.38 +0.6 592,664 + MPMX19_05857 0.38 -0.4 592,665 - MPMX19_05857 0.38 -1.8 592,665 - MPMX19_05857 0.38 +0.3 592,665 - MPMX19_05857 0.38 -0.4 592,665 - MPMX19_05857 0.38 -0.3 592,665 - MPMX19_05857 0.38 -3.3 592,665 - MPMX19_05857 0.38 +0.7 592,665 - MPMX19_05857 0.38 +0.4 592,665 - MPMX19_05857 0.38 -0.6 592,665 - MPMX19_05857 0.38 -0.4 592,710 - MPMX19_05857 0.43 +0.4 592,710 - MPMX19_05857 0.43 -0.1 592,710 - MPMX19_05857 0.43 +0.2 592,977 - MPMX19_05857 0.74 +0.2 593,019 - MPMX19_05857 0.78 +0.2 593,019 - MPMX19_05857 0.78 -1.0 593,019 - MPMX19_05857 0.78 +0.6 593,027 + MPMX19_05857 0.79 -0.4 593,027 + MPMX19_05857 0.79 -0.1 593,028 - MPMX19_05857 0.79 -0.6 593,028 - MPMX19_05857 0.79 -3.3 593,028 - MPMX19_05857 0.79 -0.7 593,028 - MPMX19_05857 0.79 -0.5 593,039 + MPMX19_05857 0.81 -0.2 593,039 + MPMX19_05857 0.81 -0.7 593,040 - MPMX19_05857 0.81 +0.9 593,063 + MPMX19_05857 0.84 -0.7 593,063 + MPMX19_05857 0.84 -2.1 593,063 + MPMX19_05857 0.84 -0.3 593,063 + MPMX19_05857 0.84 +0.2 593,063 + MPMX19_05857 0.84 -0.7 593,063 + MPMX19_05857 0.84 +0.2 593,063 + MPMX19_05857 0.84 +1.3 593,063 + MPMX19_05857 0.84 -1.1 593,063 + MPMX19_05857 0.84 +0.5 593,063 + MPMX19_05857 0.84 +0.0 593,063 + MPMX19_05857 0.84 -0.6 593,063 + MPMX19_05857 0.84 +0.3 593,063 + MPMX19_05857 0.84 -0.6 593,063 + MPMX19_05857 0.84 -0.5 593,063 + MPMX19_05857 0.84 -1.2 593,063 + MPMX19_05857 0.84 -1.3 593,063 + MPMX19_05857 0.84 +0.5 593,063 + MPMX19_05857 0.84 -1.2 593,064 - MPMX19_05857 0.84 -1.8 593,064 - MPMX19_05857 0.84 +0.3 593,064 - MPMX19_05857 0.84 -0.1 593,064 - MPMX19_05857 0.84 -0.4 593,064 - MPMX19_05857 0.84 -1.4 593,064 - MPMX19_05857 0.84 -1.2 593,064 - MPMX19_05857 0.84 -0.3 593,064 - MPMX19_05857 0.84 -0.7 593,064 - MPMX19_05857 0.84 -0.1 593,064 - MPMX19_05857 0.84 +0.5 593,064 - MPMX19_05857 0.84 +0.3 593,064 - MPMX19_05857 0.84 +0.7 593,064 - MPMX19_05857 0.84 +0.2 593,064 - MPMX19_05857 0.84 +0.7 593,064 - MPMX19_05857 0.84 -0.7 593,064 - MPMX19_05857 0.84 +0.2 593,064 - MPMX19_05857 0.84 -0.4 593,064 - MPMX19_05857 0.84 -0.4 593,064 - MPMX19_05857 0.84 +0.5 593,064 - MPMX19_05857 0.84 -0.6 593,064 - MPMX19_05857 0.84 +1.6 593,365 + MPMX19_05858 0.20 +0.6 593,365 + MPMX19_05858 0.20 -0.1 593,365 + MPMX19_05858 0.20 -1.8 593,365 + MPMX19_05858 0.20 +0.2 593,366 - MPMX19_05858 0.20 +1.4 593,366 - MPMX19_05858 0.20 -2.2 593,366 - MPMX19_05858 0.20 +1.6 593,366 - MPMX19_05858 0.20 -0.4 593,366 - MPMX19_05858 0.20 -1.7 593,366 - MPMX19_05858 0.20 +0.2 593,366 - MPMX19_05858 0.20 -0.6 593,366 - MPMX19_05858 0.20 -2.3 593,477 - MPMX19_05858 0.34 +0.4 593,569 + MPMX19_05858 0.46 -0.3 593,569 + MPMX19_05858 0.46 +1.1 593,569 + MPMX19_05858 0.46 -0.8 593,569 + MPMX19_05858 0.46 +0.4 593,569 + MPMX19_05858 0.46 -0.4 593,569 + MPMX19_05858 0.46 -0.1 593,569 + MPMX19_05858 0.46 +1.3 593,570 - MPMX19_05858 0.46 +0.6 593,570 - MPMX19_05858 0.46 +0.6 593,570 - MPMX19_05858 0.46 -0.8 593,570 - MPMX19_05858 0.46 -0.4 593,570 - MPMX19_05858 0.46 +0.8 593,570 - MPMX19_05858 0.46 -0.8 593,643 + MPMX19_05858 0.55 -1.0 593,643 + MPMX19_05858 0.55 -0.8 593,643 + MPMX19_05858 0.55 -0.7 593,643 + MPMX19_05858 0.55 -0.1 593,643 + MPMX19_05858 0.55 +0.2 593,643 + MPMX19_05858 0.55 +0.3 593,643 + MPMX19_05858 0.55 -0.1 593,644 - MPMX19_05858 0.55 +0.6 594,003 + +0.9 594,003 + -0.1 594,003 + +1.6 594,003 + +0.1 594,003 + +0.1 594,003 + -0.4 594,003 + -1.1 594,003 + -1.7 594,003 + -0.5 594,003 + +1.4 594,003 + +0.2 594,003 + +0.1 594,003 + -0.8 594,003 + +0.6 594,003 + +0.2 594,003 + -0.6 594,003 + +0.4 594,003 + +0.7 594,003 + -0.3 594,003 + +1.0 594,003 + -1.0 594,003 + -0.3 594,003 + -1.4 594,003 + +0.7 594,003 + -1.2 594,004 - -0.4 594,004 - +0.7 594,004 - +0.4 594,004 - -0.5 594,004 - +0.2 594,004 - -0.6 594,004 - -1.6 594,004 - -1.4 594,004 - -0.0 594,004 - -1.5 594,004 - -0.7 594,004 - -0.6 594,004 - -1.8 594,004 - -1.0 594,004 - +0.7 594,004 - -0.5 594,004 - +1.2 594,004 - -0.5 594,004 - -0.4 594,017 + -2.4 594,017 + +0.9 594,018 - +0.4 594,018 - +0.4 594,018 - +2.0 594,018 - -1.8 594,018 - +0.0 594,018 - -2.2 594,018 - +2.1 594,053 + -0.7 594,053 + -0.3 594,054 - -0.9 594,164 + MPMX19_05859 0.13 +0.7 594,164 + MPMX19_05859 0.13 +0.4 594,164 + MPMX19_05859 0.13 -0.5 594,164 + MPMX19_05859 0.13 -0.9 594,164 + MPMX19_05859 0.13 +0.2 594,164 + MPMX19_05859 0.13 -1.3 594,164 + MPMX19_05859 0.13 -1.1 594,164 + MPMX19_05859 0.13 -0.5 594,164 + MPMX19_05859 0.13 -1.7 594,164 + MPMX19_05859 0.13 -0.3 594,164 + MPMX19_05859 0.13 -0.5 594,164 + MPMX19_05859 0.13 +0.3 594,164 + MPMX19_05859 0.13 +1.0 594,164 + MPMX19_05859 0.13 -3.3 594,164 + MPMX19_05859 0.13 -0.8 594,165 - MPMX19_05859 0.13 +0.0 594,165 - MPMX19_05859 0.13 -0.3 594,165 - MPMX19_05859 0.13 -0.1 594,165 - MPMX19_05859 0.13 -0.7 594,165 - MPMX19_05859 0.13 -0.6 594,165 - MPMX19_05859 0.13 -1.4 594,165 - MPMX19_05859 0.13 -1.7 594,165 - MPMX19_05859 0.13 -0.3 594,165 - MPMX19_05859 0.13 -0.7 594,476 + MPMX19_05859 0.39 +0.7 594,476 + MPMX19_05859 0.39 -0.2 594,476 + MPMX19_05859 0.39 -2.3 594,477 - MPMX19_05859 0.39 -0.5 594,477 - MPMX19_05859 0.39 -0.1 594,477 - MPMX19_05859 0.39 -0.3 594,477 - MPMX19_05859 0.39 +1.6 594,477 - MPMX19_05859 0.39 -1.7 594,477 - MPMX19_05859 0.39 -0.9 594,477 - MPMX19_05859 0.39 +1.3 594,477 - MPMX19_05859 0.39 -1.1 594,477 - MPMX19_05859 0.39 +0.3 594,477 - MPMX19_05859 0.39 -0.3
Or see this region's nucleotide sequence